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AT1G01780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.978
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GATA type zinc finger transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1); Has 4819 Blast hits to 3002 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 4032; Fungi - 22; Plants - 446; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5069eggNOG:KOG1700EMBL:AC009273EMBL:AK317367EMBL:BT025779EMBL:CP002684EnsemblPlants:AT1G01780
EnsemblPlants:AT1G01780.1entrez:839267Gene3D:2.10.110.10GeneID:839267Genevisible:Q1ECF5GO:GO:0005737GO:GO:0005856
GO:GO:0008270GO:GO:0051015GO:GO:0051017Gramene:AT1G01780.1hmmpanther:PTHR24206hmmpanther:PTHR24206:SF22HOGENOM:HOG000111235
InParanoid:Q1ECF5InterPro:IPR001781iPTMnet:Q1ECF5KEGG:ath:AT1G01780OMA:NKNDQAKPaxDb:Q1ECF5Pfam:PF00412
Pfam:Q1ECF5Pfscan:PS50023PIR:D86149PRIDE:Q1ECF5PRO:PR:Q1ECF5PROSITE:PS00478PROSITE:PS50023
ProteinModelPortal:Q1ECF5Proteomes:UP000006548RefSeq:NP_171683.1scanprosite:PS00478SMART:SM00132SMR:Q1ECF5STRING:3702.AT1G01780.1
SUPFAM:SSF57716TAIR:AT1G01780UniGene:At.14903UniGene:At.72422UniProt:Q1ECF5
Coordinates (TAIR10) chr1:+:282919..284082
Molecular Weight (calculated) 22990.20 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.50
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)