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AT1G01760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : adenosine deaminases;RNA binding;RNA binding;adenosine deaminases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
adenosine deaminases;RNA binding;RNA binding;adenosine deaminases; FUNCTIONS IN: RNA binding, adenosine deaminase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT0ZeggNOG:KOG2777EMBL:CP002684EnsemblPlants:AT1G01760EnsemblPlants:AT1G01760.1entrez:839252GeneID:839252
GO:GO:0003723GO:GO:0004000GO:GO:0006396Gramene:AT1G01760.1hmmpanther:PTHR10910InParanoid:F4HU58InterPro:IPR002466
KEGG:ath:AT1G01760KO:K15440OMA:EMSYRQIPaxDb:F4HU58Pfam:PF02137Pfscan:PS50141PRIDE:F4HU58
PROSITE:PS50141ProteinModelPortal:F4HU58Proteomes:UP000006548Reactome:R-ATH-75102Reactome:R-ATH-77042RefSeq:NP_171681.3SMART:SM00552
SMR:F4HU58STRING:3702.AT1G01760.1TAIR:AT1G01760UniGene:At.51452UniProt:F4HU58
Coordinates (TAIR10) chr1:-:276412..278448
Molecular Weight (calculated) 46495.60 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.37
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDWGKTVS EKVISAYMSL PKKGKPQGRE VTVLSAFLVS SPSQDPKVIA LGTGTKCVSG SLLSPRGDIV NDSHAEVVAR RALIRFFYSE IQRMQLTSGK
101: SNEAKRQRID SETSSILESA DSSCPGEVKY KLKSGCLLHL YISQLPCGYA STSSPLYALK KIPSTQVDDS LLVQASDICS SRHSDVPEIG SNSNKGNGSQ
201: VADMVQRKPG RGETTLSVSC SDKIARWNVL GVQGALLYQV LQPVYISTIT VGQSLHSPDN FSLADHLRRS LYERILPLSD ELLTSFRLNK PLFFVAPVPP
301: SEFQHSETAQ ATLTCGYSLC WNYSGLHEVI LGTTGRKQGT SAKGALYPST QSSICKQRLL ELFLKETHGH KRESSKSKKS YRELKNKATE YYLMSKIFKG
401: KYPFNNWLRK PLNCEDFLIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)