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AT1G01750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin depolymerizing factor 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
actin depolymerizing factor 11 (ADF11); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 8 (TAIR:AT4G00680.1); Has 1654 Blast hits to 1631 proteins in 274 species: Archae - 0; Bacteria - 5; Metazoa - 781; Fungi - 163; Plants - 515; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122P5eggNOG:KOG1735EMBL:AC009273EMBL:AY072410EMBL:AY088305EMBL:BT001250EMBL:CP002684
EnsemblPlants:AT1G01750EnsemblPlants:AT1G01750.1entrez:839281Gene3D:3.40.20.10GeneID:839281Genevisible:Q9LQ81GO:GO:0015629
GO:GO:0030042Gramene:AT1G01750.1hmmpanther:PTHR11913hmmpanther:PTHR11913:SF30HOGENOM:HOG000039697InParanoid:Q9LQ81InterPro:IPR002108
InterPro:IPR017904InterPro:IPR029006KEGG:ath:AT1G01750KO:K05765OMA:FKIEQQQPANTHER:PTHR11913PaxDb:Q9LQ81
Pfam:PF00241Pfam:Q9LQ81Pfscan:PS51263PhylomeDB:Q9LQ81PIR:A86149PRIDE:Q9LQ81PRO:PR:Q9LQ81
PROSITE:PS51263ProteinModelPortal:Q9LQ81Proteomes:UP000006548RefSeq:NP_171680.1SMART:SM00102SMR:Q9LQ81STRING:3702.AT1G01750.1
SUPFAM:SSF55753TAIR:AT1G01750tair10-symbols:ADF11UniGene:At.43294UniProt:Q9LQ81
Coordinates (TAIR10) chr1:+:275528..276126
Molecular Weight (calculated) 16342.40 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.63
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSASGMHV SDECKLKFLE LKAKRNYRFI VFKIDEKAQQ VMIDKLGNPE ETYEDFTRSI PEDECRYAVY DYDFTTPENC QKSKIFFIAW SPDTSRVRSK
101: MLYASSKDRF KRELDGIQVE LQATDPSEMS LDIIKGRVNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)