suba logo
AT1G01740.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.828
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase protein with tetratricopeptide repeat domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1); Has 33834 Blast hits to 33303 proteins in 1392 species: Archae - 10; Bacteria - 2383; Metazoa - 7709; Fungi - 204; Plants - 21978; Viruses - 102; Other Eukaryotes - 1448 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G01740EnsemblPlants:AT1G01740.1EnsemblPlants:AT1G01740.2entrez:839253Gene3D:1.25.40.10GeneID:839253
GO:GO:0004672GO:GO:0005524GO:GO:0005886Gramene:AT1G01740.1Gramene:AT1G01740.2hmmpanther:PTHR27001hmmpanther:PTHR27001:SF126
InterPro:IPR000719InterPro:IPR001245InterPro:IPR011009InterPro:IPR011990KEGG:ath:AT1G01740KO:K14500OMA:SKIGTCC
Pfam:PF07714Pfam:PF13414Pfscan:PS50011PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_001184886.1RefSeq:NP_171679.1
SMR:F4HU55STRING:3702.AT1G01740.1SUPFAM:SSF48452SUPFAM:SSF56112TAIR:AT1G01740UniGene:At.51451UniProt:F4HU55
Coordinates (TAIR10) chr1:-:272111..274239
Molecular Weight (calculated) 54041.50 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.28
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGQSSKIGT CCSHKTTALE APDVENKENG EVNGVHSFRE YSLEQLKIAT SCFALENVVS EHGETAPNVV YQGKLENHMK IAIKRFSGTA WPDPRQFLEE
101: ARLVGQLRSK RMANLLGYCC EGGERLLVAE FMPNETLAKH LFHWDTEPMK WAMRLRVALY ISEALEYCSN NGHTLYHDLN AYRVLFDEEC NPRLSTFGLM
201: KNSRDGKSYS TNLAFTPPEY LRTGRITAES VIYSFGTLLL DLLTGKHIPP SHALDLIRDR NLQTLTDSCL EGQFSDSDGT ELVRLTSCCL QYEARERPNI
301: KSLVTALISL QKDTEVLSHV LMGLPQSGTF ASPPSPFAEA CSGKDLTSMV EILEKIGYKD DEDLSFMWTE QMQEAINSKK KGDIAFRRKD FSEAIEFYTQ
401: FLDLGMISAT VLVRRSQSYL MSNMAKEALD DAMKAQGISP VWYVALYLQS AALSVLGMEK ESQIALTEGS ILEARKISAS TQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)