suba logo
AT1G01720.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.
Computational
Description (TAIR10)
ATAF1; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1); Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK1ZeggNOG:ENOG410YE96EMBL:BT024513EnsemblPlants:AT1G01720EnsemblPlants:AT1G01720.1entrez:839265ExpressionAtlas:Q2HIR8
GeneID:839265GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT1G01720.1hmmpanther:PTHR31719
hmmpanther:PTHR31719:SF16InterPro:IPR003441KEGG:ath:AT1G01720OMA:VTEMVMPPaxDb:Q2HIR8Pfam:PF02365Pfam:Q39013
Pfscan:PS51005PhylomeDB:Q2HIR8PRIDE:Q2HIR8PROSITE:PS51005ProteinModelPortal:Q2HIR8RefSeq:NP_171677.1SMR:Q2HIR8
SMR:Q39013STRING:3702.AT1G01720.1SUPFAM:SSF101941TAIR:AT1G01720tair10-symbols:ANAC002tair10-symbols:ATAF1UniGene:At.134
UniGene:At.57938UniProt:Q2HIR8UniProt:Q39013
Coordinates (TAIR10) chr1:+:268471..269514
Molecular Weight (calculated) 32924.00 Da
IEP (calculated) 6.53
GRAVY (calculated) -0.66
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)