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AT1G01710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Acyl-CoA thioesterase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Acyl-CoA thioesterase family protein; FUNCTIONS IN: cyclic nucleotide binding, acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT4G00520.2); Has 3628 Blast hits to 3595 proteins in 999 species: Archae - 0; Bacteria - 1940; Metazoa - 444; Fungi - 348; Plants - 71; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1946eggNOG:KOG3016EMBL:CP002684EnsemblPlants:AT1G01710EnsemblPlants:AT1G01710.1entrez:839254Gene3D:2.60.120.10
Gene3D:3.10.129.10GeneID:839254GO:GO:0005777GO:GO:0006637GO:GO:0047617Gramene:AT1G01710.1hmmpanther:PTHR11066
hmmpanther:PTHR11066:SF34InParanoid:F4HU51InterPro:IPR000595InterPro:IPR003703InterPro:IPR014710InterPro:IPR018490InterPro:IPR029069
KEGG:ath:AT1G01710KO:K01068OMA:PRLRYWFPANTHER:PTHR11066PaxDb:F4HU51Pfam:PF00027Pfam:PF13622
Pfscan:PS50042PRIDE:F4HU51PROSITE:PS50042ProteinModelPortal:F4HU51Proteomes:UP000006548Reactome:R-ATH-193368Reactome:R-ATH-2046106
Reactome:R-ATH-389887Reactome:R-ATH-390247Reactome:R-ATH-75105RefSeq:NP_563632.2SMART:SM00100SMR:F4HU51STRING:3702.AT1G01710.1
SUPFAM:SSF51206SUPFAM:SSF54637TAIR:AT1G01710TIGRfam:TIGR00189TIGRFAMs:TIGR00189UniGene:At.14897UniProt:F4HU51
Coordinates (TAIR10) chr1:+:262950..266029
Molecular Weight (calculated) 48157.80 Da
IEP (calculated) 7.61
GRAVY (calculated) -0.22
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTESVVEFL GNVPLLQKLP SSSLKKIAQV VVPKRYGKGD YVVREDQTWD GCYFILQGEA QVSGPDEEDN RSEFLLKQYD YFGVGLSGNV HSADIVAMSQ
101: LTCLVLPRDH CHLLETNSIW QSDTSLDKCS LVERILQLDP LELNIFRGIT LPDAPIFGKV FGGQFVGQAL AAASKTVDFL KVVHSLHSYF LLVGDIDIPI
201: IYQVHRIRDG NNFATRRVDA VQKGNIIFIL LASFQKEQQG FEHQESTMPS VPDPDTLLSL EELRESRITD PHLPRSYRNK VATRNFVPWP IEIRFCEPSN
301: STNQTKSPPR LNYWFRAKGR LSDDQALHRC VVAFASDLIF CGVGLNPHRR KGVKSAALSL DHAMWFHRPL RADEWLLYVI VSPTAHETRG FVTGQMFNRK
401: GELVVSLTQE ALLREARPPK PSGTSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)