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AT1G01700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.508
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RHO guanyl-nucleotide exchange factor 2
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational
Description (TAIR10)
RHO guanyl-nucleotide exchange factor 2 (ROPGEF2); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24485eggNOG:ENOG410IG53eggNOG:ENOG410Y9NYEMBL:AC009273EMBL:CP002684EnsemblPlants:AT1G01700EnsemblPlants:AT1G01700.1
entrez:839250GeneID:839250Genevisible:Q9LQ89GO:GO:0005089GO:GO:0043547Gramene:AT1G01700.1hmmpanther:PTHR33101
hmmpanther:PTHR33101:SF9HOGENOM:HOG000238290InParanoid:Q9LQ89IntAct:Q9LQ89InterPro:IPR005512iPTMnet:Q9LQ89KEGG:ath:AT1G01700
MINT:MINT-8342688OMA:ALPKCGRPaxDb:Q9LQ89Pfam:PF03759Pfam:Q9LQ89Pfscan:PS51334PhylomeDB:Q9LQ89
PIR:A86148PRIDE:Q9LQ89PRO:PR:Q9LQ89PROSITE:PS51334ProteinModelPortal:Q9LQ89Proteomes:UP000006548RefSeq:NP_171676.1
SMR:Q9LQ89STRING:3702.AT1G01700.1TAIR:AT1G01700tair10-symbols:ATROPGEF2tair10-symbols:ROPGEF2UniGene:At.51450UniProt:Q9LQ89
Coordinates (TAIR10) chr1:-:259495..261474
Molecular Weight (calculated) 54701.60 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.49
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLPNHEEN DDVGYHQSPG PIDPNDHSAS ETPVYSTMST DSFAYHRTCS ETSGGGFSDQ IDETSSFCTE ASPSDWPVLT ESNNSASSNF PTVFDLKHNQ
101: IETDEHLAVQ EISEPELETM KERFSKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLEIE QKTTWKREMN CLLSVCDYIF EFIPKSQNLS
201: NGATVEVMES RPRADIYINL PALRKLDSML MEALDSFQKT EFWYAEEGSL SMKSTRSATG SFRKVIVQRK EEKWWLPIPL VPLQGLSEKA RKQLKSKRES
301: TNQIHKAAMA INSSILGEMD IPDSYMATLP KSGKASTGDA IYRHMTSSGR FSPEKLLDRL KIVSEHEALQ LADRVEASMY TWRRKACLNN SKSSWNMVKD
401: LMSITERSDK NYVLAERAES LLFCLKQRYP ELSQTSLDIC KIHCNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MRGEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)