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AT1G01690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.930
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : putative recombination initiation defects 3
Curator
Summary (TAIR10)
Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.
Computational
Description (TAIR10)
putative recombination initiation defects 3 (PRD3); Has 279 Blast hits to 273 proteins in 87 species: Archae - 2; Bacteria - 106; Metazoa - 105; Fungi - 5; Plants - 32; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXM2eggNOG:ENOG410YM0GEMBL:CP002684EnsemblPlants:AT1G01690EnsemblPlants:AT1G01690.1entrez:839243GeneID:839243
GO:GO:0009553GO:GO:0009555GO:GO:0042138GO:GO:0051026Gramene:AT1G01690.1hmmpanther:PTHR37695InParanoid:F4HU48
KEGG:ath:AT1G01690OMA:PIRSHTQPaxDb:F4HU48PRIDE:F4HU48ProteinModelPortal:F4HU48Proteomes:UP000006548RefSeq:NP_171675.3
STRING:3702.AT1G01690.1TAIR:AT1G01690tair10-symbols:ATPRD3tair10-symbols:PRD3UniGene:At.42635UniProt:F4HU48
Coordinates (TAIR10) chr1:+:249242..252221
Molecular Weight (calculated) 50739.40 Da
IEP (calculated) 10.22
GRAVY (calculated) -0.81
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMNINKACD LKSISVFPPN LRRSAEPQAS QQLRSQQSQQ SFSQGPSSSQ RGCGGFSQMT QSSIDELLIN DQRFSSQERD LSLKKVSSCL PPINHKREDS
101: QLVASRSSSG LSRRWSSASI GESKSQISEE LEQRFGMMET SLSRFGMMLD SIQSDIMQAN RGTKEVFLET ERIQQKLTLQ DTSLQQLRKE QADSKASLDG
201: GVKFILEEFS KDPNQEKLQK ILQMLTTIPE QVETALQKIQ REICHTFTRE IQVLASLRTP EPRVRVPTAP QVKAKENLPE QRGQAAKVLT SLKMPEPRVQ
301: VPAAPQAKEN FPEQRGPVAK SNSFCNTTLK TKQPQFPRNP NDASARAVKP YLSPKIQVGC WKTVKPEKSN FKKRATRKPV KSESTRTQFE QCSVVIDSDE
401: EDIDGGFSCL INENTRGTNF EWDAEKETER ILRTARRTKR KFGNPIIIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)