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AT1G01680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : plant U-box 54
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1535-MONOMERBRENDA:2.3.2.B10BRENDA:6.3.2.19EC:6.3.2.-eggNOG:ENOG410J5KWeggNOG:ENOG410XV39EMBL:AC009273
EMBL:CP002684EnsemblPlants:AT1G01680EnsemblPlants:AT1G01680.1entrez:839251Gene3D:3.30.40.10Gene3D:3.40.50.620GeneID:839251
GO:GO:0004842GO:GO:0006950GO:GO:0016874Gramene:AT1G01680.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF43HOGENOM:HOG000115795
InParanoid:Q9LQ92InterPro:IPR003613InterPro:IPR006016InterPro:IPR013083InterPro:IPR014729KEGG:ath:AT1G01680OMA:NQDVRES
PaxDb:Q9LQ92Pfam:PF00582Pfam:PF04564Pfam:Q9LQ92Pfscan:PS51698PhylomeDB:Q9LQ92PIR:F86147
PRO:PR:Q9LQ92PROSITE:PS51698ProteinModelPortal:Q9LQ92Proteomes:UP000006548RefSeq:NP_171674.2SMART:SM00504SMR:Q9LQ92
STRING:3702.AT1G01680.1SUPFAM:SSF57850TAIR:AT1G01680tair10-symbols:ATPUB54tair10-symbols:PUB54UniGene:At.42636UniPathway:UPA00143
UniProt:Q9LQ92
Coordinates (TAIR10) chr1:-:246411..248329
Molecular Weight (calculated) 35393.80 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.78
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)