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AT1G01670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 3857 Blast hits to 3144 proteins in 246 species: Archae - 4; Bacteria - 101; Metazoa - 863; Fungi - 177; Plants - 1725; Viruses - 10; Other Eukaryotes - 977 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-462-MONOMEREC:6.3.2.-eggNOG:ENOG410JT9UeggNOG:ENOG4110821EMBL:AC009273EMBL:AK118101EMBL:CP002684
EnsemblPlants:AT1G01670EnsemblPlants:AT1G01670.1entrez:839365Gene3D:3.30.40.10Gene3D:3.40.50.620GeneID:839365Genevisible:Q8GXQ7
GO:GO:0004842GO:GO:0016874Gramene:AT1G01670.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF43InParanoid:Q8GXQ7InterPro:IPR003613
InterPro:IPR013083InterPro:IPR014729KEGG:ath:AT1G01670ncoils:CoilOMA:TYEADEFPaxDb:Q8GXQ7Pfam:PF04564
Pfam:Q8GXQ7Pfscan:PS51698PhylomeDB:Q8GXQ7PIR:E86147PRO:PR:Q8GXQ7PROSITE:PS51698ProteinModelPortal:Q8GXQ7
Proteomes:UP000006548RefSeq:NP_171673.2SMART:SM00504SMR:Q8GXQ7SUPFAM:SSF57850TAIR:AT1G01670UniGene:At.42637
UniPathway:UPA00143UniProt:Q8GXQ7
Coordinates (TAIR10) chr1:-:242943..245163
Molecular Weight (calculated) 41866.40 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.67
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPSSSGLEQ SEIDAIQELE QTSRNDTLLK YHDICIDEGV IEQDVDMSCF SANSVGEWIV ELIYQNNIKK LIMGATADSH YSEGMVHITP TKADYVIQHA
101: PHCCNIWLVC NGNLIQTREG RFEHAGSAYS SSSSLHSIDS ALIPYGGAGR AERVTEPHAL SSSEEQSARG IEKMYYEEQR RRLEIEELKR EKEQRDKMRR
201: VREEALSSSS GVTKILYNEE VMRRREVEAE LNRAKAEIED MKRVQIELKE QHYADCRLLE KERDEAIKTT EELLRALEKG ESSIPLQWSV SIEPPQCFIC
301: PISKDIMQNP HVAADGYTYE ADEFRRWLNH GGEKSPMTNL RLENRNLIPN LVLRSAIKDW LQQHP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)