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AT1G01660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 73160 Blast hits to 42540 proteins in 2253 species: Archae - 866; Bacteria - 9091; Metazoa - 34168; Fungi - 4977; Plants - 4797; Viruses - 224; Other Eukaryotes - 19037 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-832-MONOMEREC:6.3.2.-eggNOG:ENOG410JDVDeggNOG:ENOG410YNDSEMBL:AC009273EMBL:CP002684EnsemblPlants:AT1G01660
EnsemblPlants:AT1G01660.1entrez:839461Gene3D:3.30.40.10Gene3D:3.40.50.620GeneID:839461Genevisible:P0C6E7GO:GO:0004842
GO:GO:0016874Gramene:AT1G01660.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF50HOGENOM:HOG000115794InParanoid:P0C6E7InterPro:IPR003613
InterPro:IPR013083InterPro:IPR014729iPTMnet:P0C6E7KEGG:ath:AT1G01660ncoils:CoilOMA:ELIHESKPaxDb:P0C6E7
Pfam:P0C6E7Pfam:PF04564Pfscan:PS51698PhylomeDB:P0C6E7PIR:E86147PRIDE:P0C6E7PRO:PR:P0C6E7
PROSITE:PS51698ProteinModelPortal:P0C6E7Proteomes:UP000006548RefSeq:NP_171672.1SMART:SM00504SMR:P0C6E7SUPFAM:SSF57850
TAIR:AT1G01660UniGene:At.51449UniPathway:UPA00143UniProt:P0C6E7
Coordinates (TAIR10) chr1:-:240057..242608
Molecular Weight (calculated) 66039.20 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.87
Length 568 amino acids
Sequence (TAIR10)
(BLAST)
001: MAELMAMGND VVHVAVKSDV RESRSTLLWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL EAIMYETLHD YFDFCQQEGV NEDDIYISCI EMNDVKQGIL
101: ELIHESKIKK LVMGAASDHH YSEKMFDLKS RKAKYVYQHA PSSCEVMFMC DGHLIYTKEA NLEDCMGETE SEAGQSKPKL YSSASPKCSA ELVSAIVAYI
201: DTRRDRDMLE PNASEDQSES DRNDQLYRQL KQALMEVEES KREAYEECVR RFKAENTAVE AIRSAREYEA MYNEEAKLRK EGKEALAKQR KMVEKTKQER
301: DDALIIILNG RKLYNEELRR RVEAEEMLGK EKEEHERTKK EIEEVRAIVQ DGTLYNEQLR HRKEMEESMK RQEEELEKTK KEKEEACMIS KNLMQLYEDE
401: VRQRKEAEEL VKRRREELEK VKKEKEEACS VGQNFMRLYE EEARRRKGTE EELSKVAAEK DAASSVCSEI LLLLQSYTRR HGTPSGFSDE DSVTRQPPSY
501: FICPISQEVM REPRVAADGF TYEAESLREW LDNGHETSPM TNLKLAHNNL VPNHALRSAI QEWLQRNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)