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AT1G01650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.932
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SIGNAL PEPTIDE PEPTIDASE-LIKE 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1); Has 1466 Blast hits to 1433 proteins in 284 species: Archae - 0; Bacteria - 176; Metazoa - 611; Fungi - 153; Plants - 303; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Protein Annotations
BioGrid:24734EC:3.4.23.-eggNOG:ENOG410ZP52eggNOG:KOG2442EMBL:AC009273EMBL:AK229822EMBL:CP002684
EnsemblPlants:AT1G01650EnsemblPlants:AT1G01650.1entrez:839499ExpressionAtlas:Q0WMJ8GeneID:839499Genevisible:Q0WMJ8GO:GO:0004190
GO:GO:0010008GO:GO:0016021hmmpanther:PTHR12174hmmpanther:PTHR12174:SF41InParanoid:Q0WMJ8InterPro:IPR003137InterPro:IPR006639
InterPro:IPR007369MEROPS:A22.A03merops:A22.A05OMA:PDCCSTPPANTHER:PTHR12174PaxDb:Q0WMJ8Pfam:PF02225
Pfam:PF04258Pfam:Q0WMJ8PhylomeDB:Q0WMJ8PIR:D86147PRIDE:Q0WMJ8PRO:PR:Q0WMJ8ProteinModelPortal:Q0WMJ8
Proteomes:UP000006548RefSeq:NP_171671.2SMART:SM00730STRING:3702.AT1G01650.1SUPFAM:SSF52025TAIR:AT1G01650tair10-symbols:ATSPPL4
tair10-symbols:SPPL4TMHMM:TMhelixUniGene:At.43635UniProt:Q0WMJ8
Coordinates (TAIR10) chr1:-:233188..237647
Molecular Weight (calculated) 59974.20 Da
IEP (calculated) 8.12
GRAVY (calculated) 0.52
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MILWKSLSCF SFVFGLLLYS ASFVCAGDIV HHDDSLPQRP GCNNNFVLVK VPTRVNGSEY TEYVGVGARF GPTLESKEKH ATLIKLAIAD PPDCCSTPKN
101: KLTGEVILVH RGKCSFTTKT KVAEAAGASA ILIINNSTDL FKMVCEKGEN VLDITIPVVM LPVDAGRSLE NIVKSNAIVT LQLYSPKRPA VDVAEVFLWL
201: MAVGTILCAS YWSAWTVREE AIEQDKLLKD GSDELLQLST TSSRGVVEVT VISAILFVVV ASCFLIMLYK LMSFWFIEVL VVLFCIGGVE GLQTCLVSLL
301: SCFRWFRRFG ESYVKVPFLG AVSYLTLAIC PFCIAFAVFW AVKRQYSYAW IGQDILGISL IITVLQIVRV PNLKVGFVLL SCAFMYDIFW VFVSKWWFRE
401: SVMIVVARGD RSGEDGIPML LKIPRMFDPW GGYSIIGFGD IILPGLLVTF ALRYDWLANK RLKSGYFLGT MSAYGLGLLI TYIALNLMDG HGQPALLYIV
501: PFILGTLFVL GHKRGDLKTL WTTGEPDRPC PHVRLQPQSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)