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AT1G01640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.591
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BTB/POZ domain-containing protein
Curator
Summary (TAIR10)
Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication).
Computational
Description (TAIR10)
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1); Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 3351; Fungi - 8; Plants - 720; Viruses - 35; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
BioGrid:24769eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AC009273EMBL:AK229678EMBL:BT010191EMBL:CP002684
EnsemblPlants:AT1G01640EnsemblPlants:AT1G01640.1EnsemblPlants:AT1G01640.2entrez:839534GeneID:839534Genevisible:Q9LQ95GO:GO:0016567
Gramene:AT1G01640.1Gramene:AT1G01640.2hmmpanther:PTHR24413hmmpanther:PTHR24413:SF0HOGENOM:HOG000029690InParanoid:Q9LQ95IntAct:Q9LQ95
InterPro:IPR000210InterPro:IPR011333KEGG:ath:AT1G01640KO:K10523OMA:PIPTHKAPaxDb:Q9LQ95Pfam:PF00651
Pfam:Q9LQ95Pfscan:PS50097PhylomeDB:Q9LQ95PIR:C86147PRIDE:Q9LQ95PRO:PR:Q9LQ95PROSITE:PS50097
ProteinModelPortal:Q9LQ95Proteomes:UP000006548RefSeq:NP_171670.1RefSeq:NP_849574.1SMART:SM00225SMR:Q9LQ95STRING:3702.AT1G01640.1
SUPFAM:SSF54695TAIR:AT1G01640UniGene:At.14892UniPathway:UPA00143UniProt:Q9LQ95
Coordinates (TAIR10) chr1:-:231164..231915
Molecular Weight (calculated) 23373.00 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.32
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEAEQKAAF LGGLVVSFKE QMHTDVLVKP GEEAPPIPTH KAVLAARSKV FRNMLDSDEC KTSPEESITL PDLSHDELKS LLEFLYSGNL KAPYNQYRSL
101: YLAADKYDIS YLQDVCRNHF IASLSSRNVL DILELASIPC DTILKDAAIN HIVKHMEEVV VPMKYETFVQ RNPDLSVEIT RAYLRETKAK AKDHGAPLNG
201: NTRPRIW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)