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AT1G01630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3); Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 666; Plants - 866; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y3Q0eggNOG:KOG1470EMBL:AC009273EMBL:AY085959EMBL:AY150445EMBL:CP002684EnsemblPlants:AT1G01630
EnsemblPlants:AT1G01630.1entrez:839231Gene3D:3.40.525.10GeneID:839231Gramene:AT1G01630.1hmmpanther:PTHR10174hmmpanther:PTHR10174:SF145
HOGENOM:HOG000238630IntAct:Q9LQ96InterPro:IPR001251InterPro:IPR011074KEGG:ath:AT1G01630OMA:VADLKGWPfam:PF00650
Pfscan:PS50191PhylomeDB:Q9LQ96PIR:B86147PROSITE:PS50191Proteomes:UP000006548RefSeq:NP_171669.1SMART:SM00516
SMART:SM01100SMR:Q9LQ96STRING:3702.AT1G01630.1SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT1G01630UniGene:At.27921
UniProt:Q9LQ96
Coordinates (TAIR10) chr1:+:229206..230675
Molecular Weight (calculated) 29217.50 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.45
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MENKETKQEP AAAAEQKTVP LIEDEIERSK VGIMRALCDR QDPETKEVDD LMIRRFLRAR DLDIEKASTM FLNYLTWKRS MLPKGHIPEA EIANDLSHNK
101: MCMQGHDKMG RPIAVAIGNR HNPSKGNPDE FKRFVVYTLE KICARMPRGQ EKFVAIGDLQ GWGYSNCDIR GYLAALSTLQ DCYPERLGKL YIVHAPYIFM
201: TAWKVIYPFI DANTKKKIVF VENKKLTPTL LEDIDESQLP DIYGGKLPLV PIQET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)