AT1G01630.1
Subcellular Consensus
(Prediction and Experimental) ![]() .
SUBAcon:cytosol 1.000 What is SUBAcon? What is ASURE? SUBAcon computations |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Sec14p-like phosphatidylinositol transfer family protein | ||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3); Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 666; Plants - 866; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:229206..230675 | ||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 29217.50 Da | ||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.46 | ||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||
Length | 255 amino acids | ||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MENKETKQEP AAAAEQKTVP LIEDEIERSK VGIMRALCDR QDPETKEVDD LMIRRFLRAR DLDIEKASTM FLNYLTWKRS MLPKGHIPEA EIANDLSHNK 101: MCMQGHDKMG RPIAVAIGNR HNPSKGNPDE FKRFVVYTLE KICARMPRGQ EKFVAIGDLQ GWGYSNCDIR GYLAALSTLQ DCYPERLGKL YIVHAPYIFM 201: TAWKVIYPFI DANTKKKIVF VENKKLTPTL LEDIDESQLP DIYGGKLPLV PIQET |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)