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AT1G01610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycerol-3-phosphate acyltransferase 4
Curator
Summary (TAIR10)
Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8.
Computational
Description (TAIR10)
glycerol-3-phosphate acyltransferase 4 (GPAT4); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process, cutin biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 8 (TAIR:AT4G00400.1); Has 410 Blast hits to 396 proteins in 34 species: Archae - 0; Bacteria - 20; Metazoa - 10; Fungi - 0; Plants - 373; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioGrid:24532BRENDA:2.3.1.198BRENDA:3.1.3.B13EC:2.3.1.198eggNOG:ENOG410IV8KeggNOG:ENOG4111C4NEMBL:AC061957
EMBL:AY062466EMBL:AY093294EMBL:CP002684EnsemblPlants:AT1G01610EnsemblPlants:AT1G01610.1entrez:839297GeneID:839297
Genevisible:Q9LMM0GO:GO:0008654GO:GO:0010143GO:GO:0016020GO:GO:0016021GO:GO:0016311GO:GO:0016791
GO:GO:0090447Gramene:AT1G01610.1gramene_pathway:2.3.1.15gramene_pathway:2.3.1.51gramene_pathway:PWY-5667gramene_pathway:PWY0-1319gramene_pathway:TRIGLSYN-PWY
hmmpanther:PTHR15486hmmpanther:PTHR15486:SF27HOGENOM:HOG000237722InParanoid:Q9LMM0InterPro:IPR002123iPTMnet:Q9LMM0KEGG:ath:AT1G01610
KO:K13508OMA:TCREPALPaxDb:Q9LMM0Pfam:PF01553Pfam:Q9LMM0PhylomeDB:Q9LMM0PIR:H86146
PRIDE:Q9LMM0PRO:PR:Q9LMM0ProteinModelPortal:Q9LMM0Proteomes:UP000006548RefSeq:NP_171667.1SMART:SM00563STRING:3702.AT1G01610.1
SUPFAM:0039877TAIR:AT1G01610tair10-symbols:ATGPAT4tair10-symbols:GPAT4TMHMM:TMhelixUniGene:At.22475UniProt:Q9LMM0
Coordinates (TAIR10) chr1:-:221950..224255
Molecular Weight (calculated) 56265.30 Da
IEP (calculated) 9.48
GRAVY (calculated) 0.10
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPAKKSRSF PPISECKSRE YDSIAADLDG TLLLSRSSFP YFMLVAIEAG SLFRGLILLL SLPIVIIAYL FVSESLGIQI LIFISFAGIK IKNIELVSRA
101: VLTRFYAADV RKDSFEVFDK CKKRKVVVTA NPIVMVEPFV KDYLGGDKVL GTEIEVNPKT MKATGFVKKP GVLVGDLKRL AILKEFGDDS PDLGLGDRTS
201: DHDFMSICKE GYMVHETKSA TTVPIESLKN RIIFHDGRLV QRPTPLNALI IYLWLPFGFM LSVFRVYFNL PLPERFVRYT YEILGIHLTI RGHRPPPPSP
301: GKPGNLYVLN HRTALDPIII AIALGRKITC VTYSVSRLSL MLSPIPAVAL TRDRVADAAR MRQLLEKGDL VICPEGTTCR EPYLLRFSAL FAELSDRIVP
401: VAMNCKQGMF NGTTVRGVKF WDPYFFFMNP RPSYEATFLD RLPEEMTVNG GGKTPFEVAN YVQKVIGGVL GFECTELTRK DKYLLLGGND GKVESINKTK
501: SME
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)