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AT1G01570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.941
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF604)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G00300.1); Has 558 Blast hits to 547 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 169; Plants - 281; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YRJGeggNOG:KOG2246EMBL:CP002684EMBL:KJ139035EnsemblPlants:AT1G01570EnsemblPlants:AT1G01570.1entrez:837183
GeneID:837183GO:GO:0005783GO:GO:0016740Gramene:AT1G01570.1hmmpanther:PTHR10811hmmpanther:PTHR10811:SF17InterPro:IPR006740
KEGG:ath:AT1G01570OMA:PTRTFIDPfam:PF04646Proteomes:UP000006548RefSeq:NP_171663.1TAIR:AT1G01570TMHMM:TMhelix
UniGene:At.51447UniProt:F4HU33
Coordinates (TAIR10) chr1:+:205176..207435
Molecular Weight (calculated) 55083.20 Da
IEP (calculated) 8.90
GRAVY (calculated) -0.28
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRLIFLILA ILFSLQFVFY PLNFISSSSQ PLIKFSVSPV VSGSGSVHEP DQTELKHVVF GIAASAKFWK HRKDYVKLWW KPNGEMNGVV WLDQHINQND
101: NVSKTLPPIR ISSDTSRFQY RYPKGLRSAI RITRIVSETV RLLNGTELEK NVRWIVMGDD DTVFFPENLV KVLRKYDHNQ FYYIGSSSES HIQNLKFSYG
201: MAYGGGGFAI SYPLAKALEK MQDRCIQRYS ELYGSDDRIH ACMSELGVPL TKEVGFHQID LYGKLLGLLS AHPLAPLVSI HHLDLVDPVF PNMGRVNAMR
301: RFMVPAKLDS PSLAQQSICY DADHRWTVSV SWGYTVQIIR GVLSAREMVI PTRTFIDWYK QADERSYAFN TRPIAKSACQ RPRVYYLSNA LPDLALRRTA
401: SEYVRWYDMW EPECDWDMSD PSEFERVIVY KKPDPDRWNK HRAPRRDCCR VLPTTKNGTM VIDVGACKDD EFAEFLVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)