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AT1G01550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.577
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF793)
Curator
Summary (TAIR10)
BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal
Computational
Description (TAIR10)
BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 170 Blast hits to 170 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFY4eggNOG:ENOG410YDX5EMBL:AC061957EMBL:AF083676EMBL:AF349532EMBL:AY059805EMBL:AY063906
EMBL:AY091197EMBL:BT000041EMBL:CP002684EnsemblPlants:AT1G01550EnsemblPlants:AT1G01550.1EnsemblPlants:AT1G01550.2entrez:839536
GeneID:839536Genevisible:Q9LMM6GO:GO:0005886GO:GO:0009507GO:GO:0009793GO:GO:0048364GO:GO:0048367
Gramene:AT1G01550.1Gramene:AT1G01550.2hmmpanther:PTHR31509hmmpanther:PTHR31509:SF3HOGENOM:HOG000029142InParanoid:Q9LMM6InterPro:IPR008511
iPTMnet:Q9LMM6KEGG:ath:AT1G01550OMA:SKEVDCFPaxDb:Q9LMM6Pfam:PF05633Pfam:Q9LMM6PhylomeDB:Q9LMM6
PIR:B86146PRIDE:Q9LMM6PRO:PR:Q9LMM6ProteinModelPortal:Q9LMM6Proteomes:UP000006548RefSeq:NP_001030929.1RefSeq:NP_563630.1
STRING:3702.AT1G01550.1TAIR:AT1G01550tair10-symbols:BPS1UniGene:At.19713UniProt:Q9LMM6
Coordinates (TAIR10) chr1:+:200526..201575
Molecular Weight (calculated) 38585.70 Da
IEP (calculated) 9.30
GRAVY (calculated) -0.12
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MARPQDPPRG FFPFGNPFKN LSSKNSVLSS KLLPLLNNFE TNLASSISKL VPKEKSDILT VSWMKQAMES LCETHNGIKT LITDLELPVS DWEDKWVDVY
101: LDISVKLLDL CNAFSSELTR LNQGHLLLQF ALHNLEANSP QNLSKAQSSL DSWKQHIVSK NPRIENCRAI LSSLVQTLNL PKVKNSAKGK VLMRALYGVK
201: VKTLYISGVF AAAFSGSSQN LMYLTVSNEL PWAQSFMEVQ NTMNAEIKNI FLSDGLTVLK ELEAVASGVK KLYPAIQQGS IDPISLQPLK DSVTELSNGI
301: DLVSKEVDCF FKILLSGRDT LLENLRSMGA STLQATSPKK AAGKNYRGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)