suba logo
AT1G01530.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 28
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 28 (AGL28); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 23 (TAIR:AT1G65360.1); Has 6009 Blast hits to 6009 proteins in 738 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 306; Plants - 4996; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB493420EMBL:AC061957EMBL:AY141231EMBL:CP002684EMBL:DQ446218
EMBL:DQ652819EMBL:Y12776EnsemblPlants:AT1G01530EnsemblPlants:AT1G01530.1entrez:837142GeneID:837142Genevisible:Q9LMM8
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009911Gramene:AT1G01530.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF230InParanoid:Q9LMM8IntAct:Q9LMM8InterPro:IPR002100KEGG:ath:AT1G01530ncoils:CoilOMA:KMTNESN
PaxDb:Q9LMM8Pfam:PF00319Pfscan:PS50066PhylomeDB:Q9LMM8PIR:H86145PRINTS:PR00404PROSITE:PS50066
ProteinModelPortal:Q9LMM8Proteomes:UP000006548RefSeq:NP_171660.1SMART:SM00432SMR:Q9LMM8STRING:3702.AT1G01530.1SUPFAM:SSF55455
TAIR:AT1G01530tair10-symbols:AGL28UniGene:At.42643UniProt:Q9LMM8
Coordinates (TAIR10) chr1:-:192640..193662
Molecular Weight (calculated) 28031.10 Da
IEP (calculated) 9.81
GRAVY (calculated) -0.73
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MARKNLGRRK IELVKMTNES NLQVTFSKRR SGLFKKGSEL CTLCDAEIAI IVFSPSGKAY SFGHPNVNKL LDHSLGRVIR HNNTNFAESR TKLRIQMLNE
101: SLTEVMAEKE KEQETKQSIV QNERENKDAE KWWRNSPTEL NLAQSTSMKC DLEALKKEVD EKVAQLHHRN LNFYVGSSSN VAAPAAVSGG NISTNHGFFD
201: QNGNSTSAPT LPFGFNVMNR TPAGYNSYQL QNQEVKQVHP QYWARYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)