suba logo
AT1G01520.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1311 Blast hits to 1300 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 0; Plants - 1067; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Protein Annotations
BioGrid:24572eggNOG:COG5269eggNOG:KOG0724EMBL:AC061957EMBL:AJ937211EMBL:AY519508EMBL:BT029347
EMBL:CP002684EMBL:Y12776EnsemblPlants:AT1G01520EnsemblPlants:AT1G01520.1entrez:839337Gene3D:1.10.10.60GeneID:839337
Genevisible:Q6R0H0GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009651Gramene:AT1G01520.1
hmmpanther:PTHR12802hmmpanther:PTHR12802:SF49HOGENOM:HOG000237512InParanoid:Q6R0H0IntAct:Q6R0H0InterPro:IPR001005InterPro:IPR006447
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G01520OMA:ENCCSTSPaxDb:Q6R0H0Pfam:PF00249Pfam:Q6R0H0
Pfscan:PS51294PhylomeDB:Q6R0H0PRIDE:Q6R0H0PRO:PR:Q6R0H0PROSITE:PS51294ProteinModelPortal:Q6R0H0Proteomes:UP000006548
RefSeq:NP_171659.1SMART:SM00717SMR:Q6R0H0STRING:3702.AT1G01520.1SUPFAM:SSF46689TAIR:AT1G01520TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.49839UniProt:Q6R0H0
Coordinates (TAIR10) chr1:+:190596..192139
Molecular Weight (calculated) 32797.20 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.67
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTVNPSQAH CLPMKMSLPG FNTLPHTATT IPVSIRSNRT MSFFEDPTKK VRKPYTITKS RENWTEQEHD KFLEALHLFD RDWKKIKAFV GSKTVIQIRS
101: HAQKYFLKVQ KNGTKEHLPP PRPKRKANHP YPQKAPKFTL SSSNALFQHD YLYNTNSHPV ISTTRKHGLV HCDVSIPSSV IKEEFGVSEN CCSTSSSRDK
201: QRTRIVTETN DQESCGKPHR VAPNFAEVYN FIGSVFDPKT TGHVKRLKEM DPINLETVLL LMKNLSVNLT SPEFDEQRKL ISSYNAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)