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AT1G01500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.553
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Erythronate-4-phosphate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Erythronate-4-phosphate dehydrogenase family protein; BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G19400.2); Has 143 Blast hits to 143 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24665eggNOG:ENOG410IITHeggNOG:ENOG410YD6WEMBL:AC061957EMBL:AK227140EMBL:AY088357EMBL:BT002511
EMBL:BT008724EMBL:CP002684EMBL:Y10087EMBL:Y12776EnsemblPlants:AT1G01500EnsemblPlants:AT1G01500.1entrez:839430
GeneID:839430Genevisible:Q8GUH2GO:GO:0016021Gramene:AT1G01500.1hmmpanther:PTHR10996hmmpanther:PTHR10996:SF166HOGENOM:HOG000239878
InParanoid:Q8GUH2IntAct:Q8GUH2iPTMnet:Q8GUH2KEGG:ath:AT1G01500OMA:SIEVYIAPaxDb:Q8GUH2Pfam:Q8GUH2
PhylomeDB:Q8GUH2PRIDE:Q8GUH2PRO:PR:Q8GUH2Proteomes:UP000006548RefSeq:NP_563628.1TAIR:AT1G01500TMHMM:TMhelix
UniGene:At.27718UniProt:Q8GUH2
Coordinates (TAIR10) chr1:+:185260..186573
Molecular Weight (calculated) 35927.70 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.25
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MISKDHLHHL DPLGTTKSYH MNTSTVSPPS PASSISLSQS AWLEVRLFYV RIAPCVVENV PDFLTLRHPR RETGASLEVN GVRVPSSQTA SLKLRRDRVD
101: RESSEVTYVS TETVRVTGCV DFEVYDNEDM VLCGNLDRIE GAWNNGTVSD PKTGWGMDCY IAMGNGHVSG PSASVFFQPK FGVSSPSVEV YIAGCCGGVP
201: VILTKTIQAS PRRKVARHVT LDAIPEDEEV GKEQDIGTIG DELARQSKVQ MMESEVDEYD DSDMKMAQRY YPEGMYVDED GQLSWFNAGV RVGVGIGLGM
301: CLGVGIGVGL LMRSYQATTS NLRRRFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)