suba logo
AT1G01490.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.782
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47; Bacteria - 875; Metazoa - 1731; Fungi - 337; Plants - 1157; Viruses - 96; Other Eukaryotes - 2840 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AY063805EMBL:AY091276EMBL:CP002684EMBL:Y10084EnsemblPlants:AT1G01490
EnsemblPlants:AT1G01490.1EnsemblPlants:AT1G01490.2entrez:839440GeneID:839440GO:GO:0030001GO:GO:0046872Gramene:AT1G01490.1
Gramene:AT1G01490.2hmmpanther:PTHR22814hmmpanther:PTHR22814:SF77InterPro:IPR006121KEGG:ath:AT1G01490OMA:FWAVEMMPfam:PF00403
PhylomeDB:O03982Proteomes:UP000006548RefSeq:NP_001030928.1RefSeq:NP_171656.1SMR:O03982STRING:3702.AT1G01490.1SUPFAM:SSF55008
TAIR:AT1G01490UniGene:At.27454UniProt:O03982
Coordinates (TAIR10) chr1:-:180401..182066
Molecular Weight (calculated) 19781.80 Da
IEP (calculated) 8.18
GRAVY (calculated) -1.02
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKIVLKLDL HDDRAKQKAL KTVSTLPGID SIAMDMKEKK LTVIGTVDPV NVVSKLRKYW PMTDIVLVGP AKEPEKEKKE EPKKEGGGEP PKKEGEAPKE
101: EGKKEGEAPK KEEEKKEGGD KKEGEKKDQP QAQPQPVVPP PDHVLELVKA YKAYNPHLTT YYYAQSIEEN PNACVIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)