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AT1G01470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24012629 (2013): nucleus
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Late embryogenesis abundant protein
Curator
Summary (TAIR10)
Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.
Computational
Description (TAIR10)
LATE EMBRYOGENESIS ABUNDANT 14 (LEA14); CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (TAIR:AT2G46140.1); Has 340 Blast hits to 340 proteins in 93 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 329; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:22313DNASU:837071eggNOG:ENOG410IXHNeggNOG:ENOG4111PUKEMBL:AC061957EMBL:AY074855EMBL:BT015111
EMBL:CP002684EMBL:Y10085EMBL:Y12776EMBL:Z37258EnsemblPlants:AT1G01470EnsemblPlants:AT1G01470.1entrez:837071
EvolutionaryTrace:O03983Gene3D:2.60.40.10GeneID:837071Genevisible:O03983GO:GO:0005829GO:GO:0009269GO:GO:0009611
GO:GO:0009644GO:GO:0050832Gramene:AT1G01470.1hmmpanther:PTHR31459HOGENOM:HOG000237668InParanoid:O03983IntAct:O03983
InterPro:IPR004864InterPro:IPR013783InterPro:IPR013990iPTMnet:O03983KEGG:ath:AT1G01470OMA:NIKANDTPaxDb:O03983
PDB:1XO8PDBsum:1XO8Pfam:O03983Pfam:PF03168PhylomeDB:O03983PIR:D86145PRIDE:O03983
PRO:PR:O03983ProteinModelPortal:O03983Proteomes:UP000006548RefSeq:NP_171654.1SMART:SM00769SMR:O03983STRING:3702.AT1G01470.1
SUPFAM:0051044TAIR:AT1G01470tair10-symbols:LEA14tair10-symbols:LSR3UniGene:At.25113UniProt:O03983
Coordinates (TAIR10) chr1:-:172295..172826
Molecular Weight (calculated) 16543.90 Da
IEP (calculated) 4.53
GRAVY (calculated) 0.06
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLDKAKD FVADKLTAIP KPEGSVTDVD LKDVNRDSVE YLAKVSVTNP YSHSIPICEI SFTFHSAGRE IGKGKIPDPG SLKAKDMTAL DIPVVVPYSI
101: LFNLARDVGV DWDIDYELQI GLTIDLPVVG EFTIPISSKG EIKLPTFKDF F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)