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AT1G01453.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.864
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G01453EnsemblPlants:AT1G01453.1entrez:6240388ExpressionAtlas:B3H6G3GeneID:6240388GO:GO:0016021
Gramene:AT1G01453.1hmmpanther:PTHR31234hmmpanther:PTHR31234:SF12HOGENOM:HOG000064671KEGG:ath:AT1G01453PaxDb:B3H6G3PhylomeDB:B3H6G3
PRIDE:B3H6G3Proteomes:UP000006548RefSeq:NP_001117207.1TAIR:AT1G01453TMHMM:TMhelixUniGene:At.68989UniProt:B3H6G3
Coordinates (TAIR10) chr1:-:166853..167798
Molecular Weight (calculated) 29660.50 Da
IEP (calculated) 10.53
GRAVY (calculated) -0.11
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQKRPTIAG DEEMAAEKPL QPALQKPPGF RDQQNQPSAP PSGTATLPRR RPRPIHPADK KRRCSFCRVF CCCVCILFAV ILLLILIAVA VFFLWYSPKL
101: PVVRLASFKI SNFNFSDGKS DDGWSFLSAD TTSVLDFRNP NGKLTFYYGD TDVAVILGEK DFETNLESTK VKGFIEKPGN RTAVIVPTTV RKRQVDDPTA
201: KRLQVELKSK KLLVTVTAKT KVGLAVGSRK IVTVGVSLRC GGVILQTLDS KMAQCTIKML KWIKLRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)