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AT1G01430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.714
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 25
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 25 (TBL25); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1); Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 1340; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFB9eggNOG:ENOG410XSGAEMBL:AC023628EMBL:BT004301EMBL:BT005623EMBL:CP002684EnsemblPlants:AT1G01430
EnsemblPlants:AT1G01430.1entrez:837247GeneID:837247Genevisible:Q84JH9GO:GO:0005794GO:GO:0016021GO:GO:0016413
GO:GO:0071554Gramene:AT1G01430.1hmmpanther:PTHR32285hmmpanther:PTHR32285:SF9HOGENOM:HOG000238130InParanoid:Q84JH9InterPro:IPR025846
InterPro:IPR026057InterPro:IPR029962InterPro:IPR029985KEGG:ath:AT1G01430OMA:WNDLVMKPANTHER:PTHR32285PANTHER:PTHR32285:SF9
PaxDb:Q84JH9Pfam:PF13839Pfam:PF14416Pfam:Q84JH9PhylomeDB:Q84JH9PIR:H86144PRIDE:Q84JH9
PRO:PR:Q84JH9ProteinModelPortal:Q84JH9Proteomes:UP000006548RefSeq:NP_171650.2STRING:3702.AT1G01430.1TAIR:AT1G01430tair10-symbols:TBL25
UniGene:At.25119UniProt:Q84JH9
Coordinates (TAIR10) chr1:-:156953..158536
Molecular Weight (calculated) 52504.00 Da
IEP (calculated) 6.10
GRAVY (calculated) -0.47
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLRLISKS IKIEGTPFGS SHQRNQIFLK SVAFFLLIGL AYRFLITNST VSPVPTVRSS PESLPPDPSG LTAITQTSAS VDSPANITTI ASQNVSTKCD
101: IFIGNWVPDP SGPIYTNVSC RHIQDYQNCL KNGRPDVNYL RWRWQPRDCD LPRFNPEQFL DNMRNKWLAF IGDSISRNHV QSLLCILSQV EEVEDIFHDK
201: EYKSRIWRFP SYNFTLSVIW SPFLVKAETF ENGVPFSDIR VHLDKLDQKW TDQYINFDYV VISGGKWFLK TTIFHENNTV TGCHYCQGKN NMTELGYLYS
301: YRKVLHLVLD FVAEPNHKAQ VLFRTTTPDH FENGEWDSGG FCNRTMPFTE GSEGEMKSED VSMRDIELEE FYKTTTTQQE GSNSNIVLLD TTSMSLLRPD
401: GHPGPYRYPN PFAGLKNKEL NQVQNDCLHW CLPGPIDSWN DLMVEVMLNR ERQRRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)