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AT1G01410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pumilio 22
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational
Description (TAIR10)
pumilio 22 (PUM22); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G64490.1); Has 304 Blast hits to 271 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 65; Plants - 186; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5099eggNOG:KOG2049EMBL:AC023628EMBL:CP002684EnsemblPlants:AT1G01410EnsemblPlants:AT1G01410.1entrez:837547
Gene3D:1.25.10.10GeneID:837547Genevisible:Q9LNI2GO:GO:0003723GO:GO:0005737GO:GO:0006417Gramene:AT1G01410.1
hmmpanther:PTHR12537HOGENOM:HOG000153055InParanoid:Q9LNI2InterPro:IPR001313InterPro:IPR011989InterPro:IPR016024InterPro:IPR033133
KEGG:ath:AT1G01410OMA:HYIELSFPaxDb:Q9LNI2Pfam:Q9LNI2Pfscan:PS50302Pfscan:PS50303PhylomeDB:Q9LNI2
PIR:F86144PRIDE:Q9LNI2PRO:PR:Q9LNI2PROSITE:PS50302PROSITE:PS50303ProteinModelPortal:Q9LNI2Proteomes:UP000006548
RefSeq:NP_171648.1SMART:SM00025SMR:Q9LNI2STRING:3702.AT1G01410.1SUPFAM:SSF48371TAIR:AT1G01410tair10-symbols:APUM22
tair10-symbols:PUM22UniGene:At.51446UniProt:Q9LNI2
Coordinates (TAIR10) chr1:+:153113..154198
Molecular Weight (calculated) 41257.40 Da
IEP (calculated) 6.23
GRAVY (calculated) 0.00
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MTHERGYDLA SQVLNICNVH HKKLFCHITY RHLLVLSSDD NGCVILKKVI TIADDFLKDE FLDLIAQHAH SLSMHDLGIS LIQHVLELDF TKKTTQDDKR
101: LHELMAEFDE VLSTSVTADV DKLHKLASKL MLDSDLFFEF VITRRGSLMI QIILGKSEEV DQVILAGVKQ RFIDVTTNFY GYRIMIQTIK VFKKRGDLKV
201: YDQILRLIGV HALYLTKDPD MGNKTFQHAI NLHHQDCTTF IACGLQSHYI ELSFLKHGSK IVEMLIDDRI SMVPLVLLMM EIVKCDEDTL VRLATDEYGN
301: NILKKFLALA KEHKEDFFGD LVDKLNPLLD SLRGTLGENI VAIIDSETEM VKDRIVSQGN N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)