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AT1G01400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 1; Plants - 13; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
EMBL:AC023628EMBL:AY735499EMBL:CP002684EnsemblPlants:AT1G01400EnsemblPlants:AT1G01400.1entrez:837049GeneID:837049
Gramene:AT1G01400.1KEGG:ath:AT1G01400OMA:GPQEPDLPIR:E86144Proteomes:UP000006548RefSeq:NP_171647.1TAIR:AT1G01400
UniGene:At.50920UniProt:Q9LNI3
Coordinates (TAIR10) chr1:-:151158..152149
Molecular Weight (calculated) 22301.50 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.94
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MEREEPIARN EVDHETPTKP DESASASSPR RSEETLNQST QINQTGPRSV LHLQSQESHL SNSTTTHASS PSVNVTPKPD LSSFSNTTAT QEPSPSAGLQ
101: IRTIEKDRSP GSAFPRHKRL PVFDEVCSGA VFPWYGPQEP DLPSSSGIGT MSANSHDDRR AYELAYPLPS RDIQSKKELR NAHLKTPTAT LTNTTTTTIH
201: GSRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)