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AT1G01380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
ETC1 is involved in trichome and root hair patterning in Arabidopsis.
Computational
Description (TAIR10)
ENHANCER OF TRY AND CPC 1 (ETC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: shoot apex, hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: CAPRICE-like MYB3 (TAIR:AT4G01060.1); Has 2220 Blast hits to 2220 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2207; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioGrid:23336eggNOG:ENOG410JWFEeggNOG:ENOG41104ZCEMBL:AC023628EMBL:AY519518EMBL:CP002684EnsemblPlants:AT1G01380
EnsemblPlants:AT1G01380.1entrez:838096Gene3D:1.10.10.60GeneID:838096Genevisible:Q9LNI5GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0080147GO:GO:1900033Gramene:AT1G01380.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF620
HOGENOM:HOG000238078InParanoid:Q9LNI5IntAct:Q9LNI5InterPro:IPR001005InterPro:IPR009057KEGG:ath:AT1G01380KO:K09422
OMA:EWEEIAMPaxDb:Q9LNI5Pfam:PF00249Pfam:Q9LNI5PhylomeDB:Q9LNI5PIR:C86144PRO:PR:Q9LNI5
ProteinModelPortal:Q9LNI5Proteomes:UP000006548RefSeq:NP_171645.1SMART:SM00717SMR:Q9LNI5STRING:3702.AT1G01380.1SUPFAM:SSF46689
TAIR:AT1G01380tair10-symbols:ETC1UniGene:At.42651UniProt:Q9LNI5
Coordinates (TAIR10) chr1:+:147267..147740
Molecular Weight (calculated) 9831.78 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.78
Length 83 amino acids
Sequence (TAIR10)
(BLAST)
1: MNTQRKSKHL KTNPTIVASS SEEVSSLEWE EIAMAQEEED LICRMYKLVG ERWDLIAGRI PGRTAEEIER FWVMKNHRRS QLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)