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AT1G01370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histone superfamily protein
Curator
Summary (TAIR10)
Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.
Computational
Description (TAIR10)
HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1); Has 14361 Blast hits to 14354 proteins in 7190 species: Archae - 0; Bacteria - 0; Metazoa - 10494; Fungi - 2020; Plants - 1256; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).
Protein Annotations
BioGrid:24341eggNOG:COG2036eggNOG:KOG1745EMBL:AB081500EMBL:AC023628EMBL:AF465800EMBL:AK175840
EMBL:AY086361EMBL:BT024771EMBL:CP002684EnsemblPlants:AT1G01370EnsemblPlants:AT1G01370.1EnsemblPlants:AT1G01370.2entrez:839104
Gene3D:1.10.20.10GeneID:839104Genevisible:Q8RVQ9GO:GO:0000775GO:GO:0000777GO:GO:0000785GO:GO:0000786
GO:GO:0003677GO:GO:0005634GO:GO:0007126GO:GO:0009567GO:GO:0034508GO:GO:0051301GO:GO:0051307
Gramene:AT1G01370.1Gramene:AT1G01370.2hmmpanther:PTHR11426hmmpanther:PTHR11426:SF46HOGENOM:HOG000155290InParanoid:Q8RVQ9InterPro:IPR000164
InterPro:IPR007125InterPro:IPR009072KEGG:ath:AT1G01370KO:K11253OMA:SITHMLAPANTHER:PTHR11426PaxDb:Q8RVQ9
Pfam:PF00125Pfam:Q8RVQ9PhylomeDB:Q8RVQ9PIR:B86144PRIDE:Q8RVQ9PRINTS:PR00622PRO:PR:Q8RVQ9
ProteinModelPortal:Q8RVQ9Proteomes:UP000006548RefSeq:NP_001030927.1RefSeq:NP_563627.1SMART:SM00428SMR:Q8RVQ9STRING:3702.AT1G01370.1
SUPFAM:SSF47113TAIR:AT1G01370tair10-symbols:CENH3tair10-symbols:HTR12UniGene:At.42652UniProt:Q8RVQ9
Coordinates (TAIR10) chr1:+:143773..145400
Molecular Weight (calculated) 19710.60 Da
IEP (calculated) 12.09
GRAVY (calculated) -0.77
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MARTKHRVTR SQPRNQTDAA GASSSQAAGP TTTPTRRGGE GGDNTQQTNP TTSPATGTRR GAKRSRQAMP RGSQKKSYRY RPGTVALKEI RHFQKQTNLL
101: IPAASFIREV RSITHMLAPP QINRWTAEAL VALQEAAEDY LVGLFSDSML CAIHARRVTL MRKDFELARR LGGKGRPW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)