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AT1G01355.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.723
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Putative endonuclease or glycosyl hydrolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G35640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX1HeggNOG:ENOG41104DUEMBL:CP002684EnsemblPlants:AT1G01355EnsemblPlants:AT1G01355.1entrez:6241268GeneID:6241268
GO:GO:0004519GO:GO:0005777GO:GO:0010468GO:GO:0046872Gramene:AT1G01355.1hmmpanther:PTHR14379InParanoid:F4HSA3
InterPro:IPR007087InterPro:IPR021139InterPro:IPR024768KEGG:ath:AT1G01355OMA:NLMLISYPANTHER:PTHR14379PaxDb:F4HSA3
Pfam:PF01936PROSITE:PS00028Proteomes:UP000006548RefSeq:NP_001117206.1scanprosite:PS00028TAIR:AT1G01355UniGene:At.74383
UniProt:F4HSA3
Coordinates (TAIR10) chr1:+:138513..139568
Molecular Weight (calculated) 25103.20 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.39
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKAKAVACG CPVPADVDVR RVGPCIKRAL EKLGYSGPLT ITAVGILTDV PHDFLRQVHS SGIALHHVPT VSETALSGIG WAVVKWTWYN QPPANLMLIS
101: YEHIYLTTLD MLGRIGYNTV RSILPDDPQQ AASSASPSTG SFLWESLLAS LPAADDMDSG APQEDKCGEM GEPALLCEQC RFTVQGFENF STHLKSEEHA
201: HESQYYRNED DETDGDDYVR DSEDDEEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)