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AT1G01340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.902
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclic nucleotide gated channel 10
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family
Computational
Description (TAIR10)
cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G01340EnsemblPlants:AT1G01340.1entrez:838832hmmpanther:PTHR10217hmmpanther:PTHR10217:SF465ncoils:CoilPfam:PF00027
Pfam:PF00520Pfscan:PS50042Pfscan:PS50096SUPFAM:SSF81324tair10-symbols:ACBK1tair10-symbols:ATCNGC10tair10-symbols:CNGC10
TMHMM:TMhelix
Coordinates (TAIR10) chr1:-:132414..135118
Molecular Weight (calculated) 81346.10 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.17
Length 706 amino acids
Sequence (TAIR10)
(BLAST)
001: MILFRFKDEG KPLSSEYGYG RKARPSLDRV FKNVKWGFKK PLSFPSHKDP DHKETSSVTR KNIINPQDSF LQNWNKIFLF ACVVALAIDP LFFYIPIVDS
101: ARHCLTLDSK LEIAASLLRT LIDAFYIIHI VFQFRTAYIA PSSRVFGRGE LVDDAKAIAL KYLSSYFIID LLSILPLPQI VVLAVIPSVN QPVSLLTKDY
201: LKFSIIAQYV PRILRMYPLY TEVTRTSGIV TETAWAGAAW NLSLYMLASH VFGALWYLIS VEREDRCWQE ACEKTKGCNM KFLYCENDRN VSNNFLTTSC
301: PFLDPGDITN STIFNFGIFT DALKSGVVES HDFWKKFFYC FWWGLRNLSA LGQNLQTSKF VGEIIFAISI CISGLVLFAL LIGNMQKYLE STTVREEEMR
401: VRKRDAEQWM SHRMLPEDLR KRIRRYEQYR WQETRGVEEE TLLRNLPKDL RRDIKRHLCL DLLKKVPLFE IMDEQLLDAV CDRLRPVLYT ENSYVIREGD
501: PVGEMLFVMR GRLVSATTNG GRSGFFNAVN LKASDFCGED LLPWALDPQS SSHFPISTRT VQALTEVEAF ALTAEDLKSV ASQFRRLHSK QLQHTFRFYS
601: VQWRTWSVSF IQAAWRRYCR RKLAKSLRDE EDRLREALAS QDKEHNAATV SSSLSLGGAL YASRFASNAL HNLRHNISNL PPRYTLPLLP QKPTEPDFTA
701: NHTTDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)