AT1G01320.1
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Subcellular Consensus
(Prediction and Experimental)  :max.
SUBAcon:nucleus 0.960 What is SUBAcon? What is ASURE? SUBAcon computations |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106; Bacteria - 3214; Metazoa - 4973; Fungi - 1823; Plants - 555; Viruses - 79; Other Eukaryotes - 1373 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:121582..130099 | ||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 198785.00 Da | ||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||
| Length | 1797 amino acids | ||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPKNNRGKT KGDKKKKEEK VLPVIVDVIV NLPDETEAIL KGISTDRIID VRRLLSVNFD TCHVTNYSLS HEIRGSRLKD TVDVSALKPC VLTLTEEDYN 0101: EGTAVAHVRR LLDIVACTTC FGPSPEKSDS VKSAQVKGGG KNSKQSDTSP PPSPASKDTV VDEAGETSHS FPKLGSFYEF FSLAHLTPPL QYIRLATKRE 0201: TEDIAKEDHL LSIDVKLCNG KLVHIEGCRK GFYSIGKQRI ICHNLVDLLR QISRAFDNAY SDLLKAFSER NKFGNLPYGF RANTWLIPPT AAQSPAAFPP 0301: LPVEDERWGG DGGGQGRDGS YDLVPWSNEF AFIASMPCKT AEERQVRDRK VFLLHNLFVD VATFRAIKAV QKVMAEPVLA EEDSEVLYSE TVRDLTVTVT 0401: RDTSNASSKV DTKIDGIQAT GLDKKKLMER NLLKGLTADE NTAAHDVATL GTISLKYCGY IAVVKLEKES EELSPPSQIV DLLEQPEGGA NALNINSLRF 0501: LLHKSSPEQN KKTPQQHDDE LTSSREFVSK MLEESIAKLE GEEIDRDSIM RWELGACWIQ HLQDQKNTEK DKKQTGEKSK NELKVEGLGK PLKSLNSSKK 0601: KTDVSSPKTP QTALSSQVDA VSSEADTAAS LQSDAEKNAQ ENVLILKNLL SDAAFTRLKE SDTGLHHKSL QELVDLAQNY YTEVAIPKLV ADFGSLELSP 0701: VDGRTLTDFM HTRGLRMRSL GYVVKLSDKL SHVQSLCVHE MIVRALKHIL QAVISAVATD TDKIAIKVAA ALNMMLGIPE NVAATPHNPW NVHPLIFRWL 0801: EKFLKKRYDY DLNAFSYKDL RKFAILRGLC HKVGIELIPR DFDMDSPAPF RKTDVVSLVP VHKTFYFKSM QQAACSSADG RQLLESSKTA LDKGKLEDAV 0901: TYGTKALAKL VAVCGPYHRM TAGAYSLLAV VLYHTGDFNQ ATIYQQKALD INERELGLDH PDTMKSYGDL AVFYYRLQHT ELALKYVKRA LYLLHLTCGP 1001: SHPNTAATYI NVAMMEEGLG NVHVALRYLH KALKCNQRLL GPDHIQTAAS YHAIAIALSL MEAYHLSVQH EQTTLRILRA KLGPDDLRTQ DAAAWLEYFE 1101: SKAFEQQEAA RNGTPKPDAS IASKGHLSVS DLLDYINPSH NAKGKESVAA KRKNYILKLK EKSKQSNVSE HLVEIPREKQ KEMSEEDTEE TGSEEGKSSE 1201: ENHETILAPV EEPPSPPVIE DATMDNSNPI TSSDVSTEPQ HPDGSEDGWQ PVQRPRSAGS YGRRMKQRRA SIGKVYTYQK KNVEADIDNP LFQNATQQND 1301: KYYILKKRTA SYSSYADHHS PGLTTQGTKF GRKIVKTLAY RVKSTQPSSG NAKTAGETSE EDGLKTDASS VEPPTLSSTV QSEAYHTKNS VVSLGKSPSY 1401: KEVALAPPGS IAKYQVWVPQ AEVSDKQEDD EMEKKTEQGT SMELTRDEQM ITGLEEEVKK EISADPESNI TQGEEEIKVE LQPSEGVLGG SHINENDESG 1501: GGIQVEEQVE VELINDGVTD MIHSTREQQV IDQLAADSED LKAKLSISTT DSGDASRGLL PNKKLSASAA PFNPSSPPSI IRPTPIGMNI GPSWPVNMTL 1601: HHGPPPPYPS PPTTPNLMQP MSFVYPPPYS QSVPTSTYPV TSGPFHPNQF PWQLNVSDFV PRTVWPGCHP VEFPPPHMIT EPIAATVLEP TVILPTDIDT 1701: SGVEETKEGT QDVAVADEVM DSVNHVNNAV ARSETENGNR KSEEGEKTFS ILLRGRRNRK QTLRMPISLL NRPYDSQPFK LGYSRVIRDS EAPKSVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)