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AT1G01320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.960
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106; Bacteria - 3214; Metazoa - 4973; Fungi - 1823; Plants - 555; Viruses - 79; Other Eukaryotes - 1373 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQUQeggNOG:KOG1839EMBL:CP002684EnsemblPlants:AT1G01320EnsemblPlants:AT1G01320.1entrez:839293ExpressionAtlas:F4HS99
Gene3D:1.25.40.10GeneID:839293GO:GO:0005737Gramene:AT1G01320.1hmmpanther:PTHR12601hmmpanther:PTHR12601:SF17InParanoid:F4HS99
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR023231InterPro:IPR028275OMA:PVEDERWPaxDb:F4HS99
Pfam:PF12807Pfam:PF13424Pfam:PF15044Pfscan:PS50005Pfscan:PS50293PRIDE:F4HS99PROSITE:PS50005
PROSITE:PS50293ProteinModelPortal:F4HS99Proteomes:UP000006548RefSeq:NP_171639.3SMART:SM00028STRING:3702.AT1G01320.1SUPFAM:0049393
SUPFAM:SSF103107SUPFAM:SSF48452TAIR:AT1G01320UniGene:At.24686UniProt:F4HS99
Coordinates (TAIR10) chr1:-:121582..130099
Molecular Weight (calculated) 198785.00 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.52
Length 1797 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAPKNNRGKT KGDKKKKEEK VLPVIVDVIV NLPDETEAIL KGISTDRIID VRRLLSVNFD TCHVTNYSLS HEIRGSRLKD TVDVSALKPC VLTLTEEDYN
0101: EGTAVAHVRR LLDIVACTTC FGPSPEKSDS VKSAQVKGGG KNSKQSDTSP PPSPASKDTV VDEAGETSHS FPKLGSFYEF FSLAHLTPPL QYIRLATKRE
0201: TEDIAKEDHL LSIDVKLCNG KLVHIEGCRK GFYSIGKQRI ICHNLVDLLR QISRAFDNAY SDLLKAFSER NKFGNLPYGF RANTWLIPPT AAQSPAAFPP
0301: LPVEDERWGG DGGGQGRDGS YDLVPWSNEF AFIASMPCKT AEERQVRDRK VFLLHNLFVD VATFRAIKAV QKVMAEPVLA EEDSEVLYSE TVRDLTVTVT
0401: RDTSNASSKV DTKIDGIQAT GLDKKKLMER NLLKGLTADE NTAAHDVATL GTISLKYCGY IAVVKLEKES EELSPPSQIV DLLEQPEGGA NALNINSLRF
0501: LLHKSSPEQN KKTPQQHDDE LTSSREFVSK MLEESIAKLE GEEIDRDSIM RWELGACWIQ HLQDQKNTEK DKKQTGEKSK NELKVEGLGK PLKSLNSSKK
0601: KTDVSSPKTP QTALSSQVDA VSSEADTAAS LQSDAEKNAQ ENVLILKNLL SDAAFTRLKE SDTGLHHKSL QELVDLAQNY YTEVAIPKLV ADFGSLELSP
0701: VDGRTLTDFM HTRGLRMRSL GYVVKLSDKL SHVQSLCVHE MIVRALKHIL QAVISAVATD TDKIAIKVAA ALNMMLGIPE NVAATPHNPW NVHPLIFRWL
0801: EKFLKKRYDY DLNAFSYKDL RKFAILRGLC HKVGIELIPR DFDMDSPAPF RKTDVVSLVP VHKTFYFKSM QQAACSSADG RQLLESSKTA LDKGKLEDAV
0901: TYGTKALAKL VAVCGPYHRM TAGAYSLLAV VLYHTGDFNQ ATIYQQKALD INERELGLDH PDTMKSYGDL AVFYYRLQHT ELALKYVKRA LYLLHLTCGP
1001: SHPNTAATYI NVAMMEEGLG NVHVALRYLH KALKCNQRLL GPDHIQTAAS YHAIAIALSL MEAYHLSVQH EQTTLRILRA KLGPDDLRTQ DAAAWLEYFE
1101: SKAFEQQEAA RNGTPKPDAS IASKGHLSVS DLLDYINPSH NAKGKESVAA KRKNYILKLK EKSKQSNVSE HLVEIPREKQ KEMSEEDTEE TGSEEGKSSE
1201: ENHETILAPV EEPPSPPVIE DATMDNSNPI TSSDVSTEPQ HPDGSEDGWQ PVQRPRSAGS YGRRMKQRRA SIGKVYTYQK KNVEADIDNP LFQNATQQND
1301: KYYILKKRTA SYSSYADHHS PGLTTQGTKF GRKIVKTLAY RVKSTQPSSG NAKTAGETSE EDGLKTDASS VEPPTLSSTV QSEAYHTKNS VVSLGKSPSY
1401: KEVALAPPGS IAKYQVWVPQ AEVSDKQEDD EMEKKTEQGT SMELTRDEQM ITGLEEEVKK EISADPESNI TQGEEEIKVE LQPSEGVLGG SHINENDESG
1501: GGIQVEEQVE VELINDGVTD MIHSTREQQV IDQLAADSED LKAKLSISTT DSGDASRGLL PNKKLSASAA PFNPSSPPSI IRPTPIGMNI GPSWPVNMTL
1601: HHGPPPPYPS PPTTPNLMQP MSFVYPPPYS QSVPTSTYPV TSGPFHPNQF PWQLNVSDFV PRTVWPGCHP VEFPPPHMIT EPIAATVLEP TVILPTDIDT
1701: SGVEETKEGT QDVAVADEVM DSVNHVNNAV ARSETENGNR KSEEGEKTFS ILLRGRRNRK QTLRMPISLL NRPYDSQPFK LGYSRVIRDS EAPKSVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)