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AT1G01310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT3G09590.1); Has 2987 Blast hits to 2892 proteins in 368 species: Archae - 0; Bacteria - 64; Metazoa - 1591; Fungi - 333; Plants - 892; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2340eggNOG:KOG3017EMBL:BT014786EMBL:BT015693EMBL:CP002684EnsemblPlants:AT1G01310EnsemblPlants:AT1G01310.1
entrez:839333Gene3D:3.40.33.10GeneID:839333GO:GO:0005576Gramene:AT1G01310.1hmmpanther:PTHR10334hmmpanther:PTHR10334:SF204
InterPro:IPR001283InterPro:IPR002413InterPro:IPR014044InterPro:IPR018244KEGG:ath:AT1G01310OMA:ARTWANQPANTHER:PTHR10334
Pfam:PF00188PhylomeDB:Q6ID87PRINTS:PR00837PRINTS:PR00838PROSITE:PS01009Proteomes:UP000006548RefSeq:NP_171638.2
scanprosite:PS01009SMART:SM00198SMR:Q6ID87STRING:3702.AT1G01310.1SUPFAM:SSF55797TAIR:AT1G01310TMHMM:TMhelix
UniGene:At.24686UniGene:At.74918UniProt:Q6ID87
Coordinates (TAIR10) chr1:+:120221..120946
Molecular Weight (calculated) 27397.30 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.56
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MELRKRKIRA PLHIFVGITF FLLQLWSGTA QINHEDSSTK PSVKNSPSAT STRLLLSPPS FTGNRFSFRF RWRRIRRRNR VNRASREFLI AHNLVRARVG
101: EPPFQWDGRL AAYARTWANQ RVGDCRLVHS NGPYGENIFW AGKNNWSPRD IVNVWADEDK FYDVKGNTCE PQHMCGHYTQ IVWRDSTKVG CASVDCSNGG
201: VYAICVYNPP GNYEGENPFG SYDDQIGLAR DDPPAVIGGM A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)