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AT1G01300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, response to karrikin; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G61820.1); Has 3898 Blast hits to 3871 proteins in 332 species: Archae - 0; Bacteria - 0; Metazoa - 1165; Fungi - 579; Plants - 1953; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G01300-MONOMEREC:3.4.23.-eggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AC023628EMBL:AY088528EMBL:AY128344
EMBL:BT006619EMBL:CP002684EnsemblPlants:AT1G01300EnsemblPlants:AT1G01300.1entrez:839375Gene3D:2.40.70.10GeneID:839375
GO:GO:0004190GO:GO:0009505GO:GO:0016020GO:GO:0080167Gramene:AT1G01300.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF308
HOGENOM:HOG000237482IntAct:Q9LNJ3InterPro:IPR001461InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121
KEGG:ath:AT1G01300MEROPS:A01.A05OMA:NVTHAPRPANTHER:PTHR13683PaxDb:Q8L9B9Pfam:PF14541Pfam:PF14543
Pfscan:PS51767PhylomeDB:Q9LNJ3PIR:C86143PRINTS:PR00792PROSITE:PS00141PROSITE:PS51767Proteomes:UP000006548
RefSeq:NP_171637.1SMR:Q9LNJ3STRING:3702.AT1G01300.1SUPFAM:SSF50630SwissPalm:Q9LNJ3TAIR:AT1G01300TMHMM:TMhelix
UniGene:At.22191UniProt:Q9LNJ3
Coordinates (TAIR10) chr1:+:117065..118522
Molecular Weight (calculated) 52178.10 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.04
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)