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AT1G01260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1); Has 3647 Blast hits to 3273 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 174; Fungi - 93; Plants - 3336; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
BioGrid:24780eggNOG:ENOG410IEDReggNOG:ENOG410YCJJEMBL:AC023628EMBL:AF251698EMBL:AF488559EMBL:AY079012
EMBL:AY120752EMBL:BT004517EMBL:CP002684EnsemblPlants:AT1G01260EnsemblPlants:AT1G01260.1EnsemblPlants:AT1G01260.2EnsemblPlants:AT1G01260.3
entrez:839545Gene3D:4.10.280.10GeneID:839545Genevisible:Q9LNJ5GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0044212Gramene:AT1G01260.1Gramene:AT1G01260.2Gramene:AT1G01260.3hmmpanther:PTHR11514hmmpanther:PTHR11514:SF47
HOGENOM:HOG000238207InParanoid:Q9LNJ5IntAct:Q9LNJ5InterPro:IPR011598InterPro:IPR025610KEGG:ath:AT1G01260ncoils:Coil
OMA:LMAIGNDPaxDb:Q9LNJ5Pfam:PF00010Pfam:PF14215Pfam:Q9LNJ5Pfscan:PS50888PhylomeDB:Q9LNJ5
PIR:H86142PRIDE:Q9LNJ5PRO:PR:Q9LNJ5PROSITE:PS50888ProteinModelPortal:Q9LNJ5Proteomes:UP000006548RefSeq:NP_001077440.1
RefSeq:NP_001184883.1RefSeq:NP_171634.1SMART:SM00353SMR:Q9LNJ5STRING:3702.AT1G01260.1SUPFAM:SSF47459TAIR:AT1G01260
UniGene:At.28312UniProt:Q9LNJ5
Coordinates (TAIR10) chr1:+:109595..111367
Molecular Weight (calculated) 66005.60 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.59
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)