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AT1G01250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 5404 Blast hits to 5361 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5399; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ8AeggNOG:ENOG41118MREMBL:AC023628EMBL:AY086507EMBL:BT025752EMBL:CP002684EnsemblPlants:AT1G01250
EnsemblPlants:AT1G01250.1entrez:839322Gene3D:3.30.730.10GeneID:839322Genevisible:Q1ECI2GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873Gramene:AT1G01250.1hmmpanther:PTHR31985hmmpanther:PTHR31985:SF15HOGENOM:HOG000237624
InParanoid:Q1ECI2InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G01250KO:K09286OMA:YDVAAFCPaxDb:Q1ECI2
Pfam:PF00847Pfam:Q1ECI2Pfscan:PS51032PhylomeDB:Q1ECI2PIR:G86142PRIDE:Q1ECI2PRINTS:PR00367
PRO:PR:Q1ECI2PROSITE:PS51032ProteinModelPortal:Q1ECI2Proteomes:UP000006548RefSeq:NP_563624.1SMART:SM00380SMR:Q1ECI2
STRING:3702.AT1G01250.1SUPFAM:SSF54171TAIR:AT1G01250UniGene:At.42657UniProt:Q1ECI2
Coordinates (TAIR10) chr1:-:104731..105309
Molecular Weight (calculated) 21052.00 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.47
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPQRMKLSS PPVTNNEPTA TASAVKSCGG GGKETSSSTT RHPVYHGVRK RRWGKWVSEI REPRKKSRIW LGSFPVPEMA AKAYDVAAFC LKGRKAQLNF
101: PEEIEDLPRP STCTPRDIQV AAAKAANAVK IIKMGDDDVA GIDDGDDFWE GIELPELMMS GGGWSPEPFV AGDDATWLVD GDLYQYQFMA CL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)