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AT1G01230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.875
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ORMDL family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ORMDL family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding; LOCATED IN: integral to membrane, endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ORMDL (InterPro:IPR007203); BEST Arabidopsis thaliana protein match is: ORMDL family protein (TAIR:AT5G42000.1); Has 538 Blast hits to 538 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 276; Fungi - 148; Plants - 90; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5081eggNOG:KOG3319EMBL:AF360237EMBL:AY040036EMBL:CP002684EnsemblPlants:AT1G01230EnsemblPlants:AT1G01230.1
entrez:839331GeneID:839331GO:GO:0005789GO:GO:0016021Gramene:AT1G01230.1hmmpanther:PTHR12665hmmpanther:PTHR12665:SF14
IntAct:Q9C5I0InterPro:IPR007203KEGG:ath:AT1G01230OMA:PWLFLNTPANTHER:PTHR12665Pfam:PF04061PhylomeDB:Q9C5I0
PIRSF:PIRSF018147Proteomes:UP000006548RefSeq:NP_563622.1STRING:3702.AT1G01230.1TAIR:AT1G01230TMHMM:TMhelixUniGene:At.23465
UniGene:At.73061UniProt:Q9C5I0
Coordinates (TAIR10) chr1:+:97620..99046
Molecular Weight (calculated) 18204.30 Da
IEP (calculated) 9.36
GRAVY (calculated) 0.20
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLYVKAVP PPDMNRNTEW FMYPGVWTTY MLILFFGWLV VLSVSGCSPG MAWTVVNLAH FVVTYHSFHW MKGTPFADDQ GIYNGLTWWE QMDNGQQLTR
101: NRKFLTLVPV VLYLIASHTT DYRHPWLFLN TLAVMVLVVA KFPNMHKVRI FGINGDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)