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AT1G01225.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NC domain-containing protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NC domain-containing protein-related; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT4G00905.1); Has 173 Blast hits to 172 proteins in 34 species: Archae - 0; Bacteria - 24; Metazoa - 5; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJW5eggNOG:ENOG410XNRZEMBL:BT024776EMBL:CP002684EnsemblPlants:AT1G01225EnsemblPlants:AT1G01225.1entrez:839358
GeneID:839358Gramene:AT1G01225.1hmmpanther:PTHR13943hmmpanther:PTHR13943:SF32HOGENOM:HOG000241343InterPro:IPR007053KEGG:ath:AT1G01225
OMA:IFPDCGFPfam:PF04970PhylomeDB:Q29PY0Proteomes:UP000006548RefSeq:NP_563621.1SMR:Q29PY0TAIR:AT1G01225
UniGene:At.42658UniProt:Q29PY0
Coordinates (TAIR10) chr1:+:96064..97242
Molecular Weight (calculated) 28401.50 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.10
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)