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AT1G01210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : DNA-directed RNA polymerase, subunit M, archaeal
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-directed RNA polymerase, subunit M, archaeal; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase, subunit M, archaeal (InterPro:IPR006288), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, subunit M, archaeal (TAIR:AT4G07950.1); Has 1129 Blast hits to 1129 proteins in 326 species: Archae - 242; Bacteria - 0; Metazoa - 276; Fungi - 294; Plants - 112; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1594eggNOG:KOG2906EMBL:AC023628EMBL:AK229520EMBL:BT008558EMBL:BT008671EMBL:CP002684
EnsemblPlants:AT1G01210EnsemblPlants:AT1G01210.1entrez:839481GeneID:839481GO:GO:0003677GO:GO:0003899GO:GO:0005730
GO:GO:0006351GO:GO:0008270Gramene:AT1G01210.1hmmpanther:PTHR11239hmmpanther:PTHR11239:SF12HOGENOM:HOG000228131IntAct:Q9LNK0
InterPro:IPR001222InterPro:IPR001529InterPro:IPR006288InterPro:IPR012164InterPro:IPR019761KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6
KEGG:ath:AT1G01210KO:K03019OMA:TEDMDNAPfam:PF01096Pfam:PF02150Pfscan:PS51133PhylomeDB:Q9LNK0
PIR:C86142PIRSF:PIRSF005586PROSITE:PS00466PROSITE:PS01030PROSITE:PS51133Proteomes:UP000006548Reactome:R-ATH-1834949
RefSeq:NP_171629.1scanprosite:PS00466scanprosite:PS01030SMART:SM00440SMART:SM00661SMR:Q9LNK0STRING:3702.AT1G01210.1
SUPFAM:SSF57783TAIR:AT1G01210TIGRfam:TIGR01384TIGRFAMs:TIGR01384UniGene:At.42660UniProt:Q9LNK0
Coordinates (TAIR10) chr1:+:88977..89529
Molecular Weight (calculated) 12274.70 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.57
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFCPTCGNL LRYEGGGNSR FFCSTCPYVA YIQRQVEIKK KQLLVKKSIE AVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)