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AT1G01200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPase homolog A3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A3 (RABA3); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, nucleus, cell plate; EXPRESSED IN: lateral root cap, hypocotyl, root, flower, epidermis; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1); Has 27164 Blast hits to 27137 proteins in 734 species: Archae - 19; Bacteria - 134; Metazoa - 14292; Fungi - 3779; Plants - 3194; Viruses - 20; Other Eukaryotes - 5726 (source: NCBI BLink).
Protein Annotations
BioGrid:24728eggNOG:COG1100eggNOG:KOG0087EMBL:AC023628EMBL:BT010707EMBL:BT010979EMBL:CP002684
EnsemblPlants:AT1G01200EnsemblPlants:AT1G01200.1entrez:839493Gene3D:3.40.50.300GeneID:839493Genevisible:Q9LNK1GO:GO:0005525
GO:GO:0005634GO:GO:0005768GO:GO:0005794GO:GO:0007264GO:GO:0009504GO:GO:0010008GO:GO:0015031
GO:GO:0042546Gramene:AT1G01200.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF345HOGENOM:HOG000233968InParanoid:Q9LNK1IntAct:Q9LNK1
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417iPTMnet:Q9LNK1KEGG:ath:AT1G01200OMA:TSAMKTPPaxDb:Q9LNK1
Pfam:PF00071Pfam:Q9LNK1Pfscan:PS51419PhylomeDB:Q9LNK1PIR:B86142PRIDE:Q9LNK1PRO:PR:Q9LNK1
PROSITE:PS51419ProteinModelPortal:Q9LNK1Proteomes:UP000006548RefSeq:NP_171628.2SMR:Q9LNK1STRING:3702.AT1G01200.1SUPFAM:SSF52540
TAIR:AT1G01200tair10-symbols:ATRAB-A3tair10-symbols:ATRABA3tair10-symbols:RABA3TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.42661
UniProt:Q9LNK1
Coordinates (TAIR10) chr1:-:86715..88145
Molecular Weight (calculated) 26251.10 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.25
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)