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AT1G01180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.701
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: lipid biosynthetic process; EXPRESSED IN: sperm cell, hypocotyl; CONTAINS InterPro DOMAIN/s: Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase (InterPro:IPR007072); Has 274 Blast hits to 274 proteins in 51 species: Archae - 0; Bacteria - 75; Metazoa - 2; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:CP002684EnsemblPlants:AT1G01180EnsemblPlants:AT1G01180.1entrez:839239Gene3D:3.40.50.150
GeneID:839239GO:GO:0008168GO:GO:0016021Gramene:AT1G01180.1hmmpanther:PTHR10509hmmpanther:PTHR10509:SF17InParanoid:F4HS78
InterPro:IPR029063iPTMnet:F4HS78KEGG:ath:AT1G01180OMA:DYFTSADPaxDb:F4HS78Pfam:PF13578PRIDE:F4HS78
ProteinModelPortal:F4HS78Proteomes:UP000006548RefSeq:NP_171626.2STRING:3702.AT1G01180.1SUPFAM:SSF53335TAIR:AT1G01180TMHMM:TMhelix
UniGene:At.42663UniGene:At.75387UniProt:F4HS78
Coordinates (TAIR10) chr1:+:75633..76556
Molecular Weight (calculated) 34704.90 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.12
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MKEDRRLPHK RDAFQFLKTK AAYVIVIVLT YAFGYFSAYH YHQPLQQQLP PSTTAVETTK PQVCSIDNFR VTTPCGNLVP PELIRQTVID RIFNGTSPYI
101: DFPPPHAKKF LRPKRIKGWG SYGAVFENLI RRVKPKTIVE VGSFLGASAI HMANLTRRLG LEETQILCVD DFRGWPGFRD RFKDMALVNG DVLLMYQFMQ
201: NVVISDFSGS ILPVPFSTGS ALEKLCEWGV TADLVEIDAG HDFNSAWADI NRAVRILRPG GVIFGHDYFT AADNRGVRRA VNLFAEINRL KVKTDGQHWV
301: IDSVKVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)