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AT1G01160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRF1-interacting factor 2
Curator
Summary (TAIR10)
Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA
Computational
Description (TAIR10)
GRF1-interacting factor 2 (GIF2); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 425 Blast hits to 425 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 291; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
BioGrid:24513EMBL:AC007323EMBL:AF410307EMBL:AY102133EMBL:AY102640EMBL:CP002684EnsemblPlants:AT1G01160
EnsemblPlants:AT1G01160.1entrez:839278ExpressionAtlas:Q9MAL9GeneID:839278Genevisible:Q9MAL9GO:GO:0006351GO:GO:0006355
hmmpanther:PTHR23107HOGENOM:HOG000239707InParanoid:Q9MAL9IntAct:Q9MAL9InterPro:IPR007726PANTHER:PTHR23107Pfam:PF05030
Pfam:Q9MAL9PhylomeDB:Q9MAL9PIR:H86141PRIDE:Q9MAL9PRO:PR:Q9MAL9ProteinModelPortal:Q9MAL9Proteomes:UP000006548
RefSeq:NP_563619.1TAIR:AT1G01160tair10-symbols:GIF2UniGene:At.11894UniGene:At.71103UniProt:Q9MAL9
Coordinates (TAIR10) chr1:+:72583..73883
Molecular Weight (calculated) 21040.30 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.66
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MQQQQSPQMF PMVPSIPPAN NITTEQIQKY LDENKKLIMA IMENQNLGKL AECAQYQALL QKNLMYLAAI ADAQPPPPTP GPSPSTAVAA QMATPHSGMQ
101: PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)