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AT1G01150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1); Has 94 Blast hits to 77 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G01150EnsemblPlants:AT1G01150.1entrez:839294Gene3D:1.10.10.60Gene3D:3.30.40.10GeneID:839294
GO:GO:0003677GO:GO:0046872Gramene:AT1G01150.1hmmpanther:PTHR21717hmmpanther:PTHR21717:SF18InParanoid:F4HQJ2InterPro:IPR009057
InterPro:IPR011011InterPro:IPR013083InterPro:IPR017877InterPro:IPR019786KEGG:ath:AT1G01150ncoils:CoilOMA:HENLHQL
PaxDb:F4HQJ2Pfscan:PS50090PRIDE:F4HQJ2PROSITE:PS01359PROSITE:PS50090ProteinModelPortal:F4HQJ2Proteomes:UP000006548
RefSeq:NP_171623.1scanprosite:PS01359SMR:F4HQJ2SUPFAM:SSF46689SUPFAM:SSF57903TAIR:AT1G01150UniGene:At.51444
UniProt:F4HQJ2
Coordinates (TAIR10) chr1:-:70115..71998
Molecular Weight (calculated) 39222.40 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.53
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSDLPLDED DIALLKSPYI GEIVEEIGFV REKRIAHCIV QCDDGGDEDV NSAPNIFTYD NVPLKKRHYL GTSDTFRSFE PLNEHACIVC DIADDGVVPC
101: SGNECPLAVH RKCVELDCED PATFYCPYCW FKEQATRSTA LRTRGVAAAK TLVQYGCSEL RSGDIVMTRE NSQLENGSDN SLPMQLHENL HQLQELVKHL
201: KARNSQLDES TDQFIDMEKS CGEAYAVVND QPKRVLWTVN EEKMLREGVE KFSDTINKNM PWKKILEMGK GIFHTTRNSS DLKDKWRNMN YLDLVEVEID
301: IIIVVAEIGD QNGEGKKRRS DEEDESNRNH PKIRICGMVF VKPIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)