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AT1G01120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.692
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 1
Curator
Summary (TAIR10)
Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 1 (KCS1); FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosolic ribosome, endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 11 (TAIR:AT2G26640.1); Has 3961 Blast hits to 3946 proteins in 966 species: Archae - 0; Bacteria - 1388; Metazoa - 0; Fungi - 5; Plants - 2408; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G01120-MONOMERBioCyc:MetaCyc:AT1G01120-MONOMERBioGrid:24630ChEMBL:CHEMBL2242739EC:2.3.1.199eggNOG:ENOG410IHMWeggNOG:ENOG410Y5VH
EMBL:AC007323EMBL:AF053345EMBL:AK221191EMBL:AY074285EMBL:AY096568EMBL:CP002684EnsemblPlants:AT1G01120
EnsemblPlants:AT1G01120.1entrez:839395Gene3D:3.40.47.10GeneID:839395Genevisible:Q9MAM3GO:GO:0005783GO:GO:0005789
GO:GO:0006633GO:GO:0009409GO:GO:0009416GO:GO:0009922GO:GO:0010025GO:GO:0016020GO:GO:0016021
GO:GO:0022626Gramene:AT1G01120.1gramene_pathway:2.3.1.-gramene_pathway:PWY-5080hmmpanther:PTHR31561hmmpanther:PTHR31561:SF1HOGENOM:HOG000238893
InParanoid:Q9MAM3IntAct:Q9MAM3InterPro:IPR012392InterPro:IPR013601InterPro:IPR013747InterPro:IPR016039KEGG:00061+2.3.1.180
KEGG:00062+2.3.1.199KEGG:ath:AT1G01120KO:K15397MINT:MINT-8063290OMA:LCMKEARPANTHER:PTHR31561PaxDb:Q9MAM3
Pfam:PF08392Pfam:PF08541Pfam:Q9MAM3PhylomeDB:Q9MAM3PIR:F86141PIRSF:PIRSF036417PRIDE:Q9MAM3
PRO:PR:Q9MAM3ProteinModelPortal:Q9MAM3Proteomes:UP000006548RefSeq:NP_171620.2SMR:Q9MAM3STRING:3702.AT1G01120.1SUPFAM:SSF53901
TAIR:AT1G01120tair10-symbols:KCS1TMHMM:TMhelixUniGene:At.22667UniPathway:UPA00094UniProt:Q9MAM3
Coordinates (TAIR10) chr1:-:57392..58978
Molecular Weight (calculated) 59279.80 Da
IEP (calculated) 8.88
GRAVY (calculated) -0.11
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)