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AT1G01110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 1112 Blast hits to 678 proteins in 50 species: Archae - 0; Bacteria - 10; Metazoa - 109; Fungi - 16; Plants - 528; Viruses - 4; Other Eukaryotes - 445 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ4WeggNOG:ENOG410YBUUEMBL:CP002684EnsemblPlants:AT1G01110EnsemblPlants:AT1G01110.1entrez:839394ExpressionAtlas:B3H705
GeneID:839394Gramene:AT1G01110.1hmmpanther:PTHR32295hmmpanther:PTHR32295:SF0HOGENOM:HOG000242551InterPro:IPR025064PaxDb:B3H705
Pfam:PF13178PRIDE:B3H705ProteinModelPortal:B3H705Proteomes:UP000006548RefSeq:NP_563618.1STRING:3702.AT1G01110.2TAIR:AT1G01110
tair10-symbols:IQD18UniGene:At.42667UniProt:B3H705
Coordinates (TAIR10) chr1:+:53022..54494
Molecular Weight (calculated) 41208.70 Da
IEP (calculated) 10.59
GRAVY (calculated) -1.03
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLRCMQALV RVQSRVLDQR KRLSHDGSRK SAFSDSHAVF ESRYLQDLSD RQSMSREGSS AAEDWDDRPH TIDAVKVMLQ RRRDTALRHD KTNLSQAFSQ
101: KMWRTVGNQS TEGHHEVELE EERPKWLDRW MATRPWDKRA SSRASVDQRV SVKTVEIDTS QPYSRTGAGS PSRGQRPSSP SRTSHHYQSR NNFSATPSPA
201: KSRPILIRSA SPRCQRDPRE DRDRAAYSYT SNTPSLRSNY SFTARSGCSI STTMVNNASL LPNYMASTES AKARIRSHSA PRQRPSTPER DRAGLVKKRL
301: SYPVPPPAEY EDNNSLRSPS FKSVAGSHFG GMLEQQSNYS SCCTESNGVE ISPASTSDFR NWLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)