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AT1G01100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:18433157 (2008): nucleus
  • PMID:18433157 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 60S acidic ribosomal protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76; Bacteria - 0; Metazoa - 858; Fungi - 474; Plants - 451; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).
Protein Annotations
BioGrid:24645eggNOG:COG2058eggNOG:KOG1762EMBL:AC007323EMBL:AY050975EMBL:AY086359EMBL:AY091176
EMBL:CP002684EnsemblPlants:AT1G01100EnsemblPlants:AT1G01100.1EnsemblPlants:AT1G01100.2EnsemblPlants:AT1G01100.4entrez:839410ExpressionAtlas:Q8LCW9
GeneID:839410Genevisible:Q8LCW9GO:GO:0003735GO:GO:0005634GO:GO:0005829GO:GO:0005886GO:GO:0006414
GO:GO:0022626HAMAP:MF_01478hmmpanther:PTHR21141HOGENOM:HOG000229898InParanoid:Q8LCW9IntAct:Q8LCW9InterPro:IPR027534
iPTMnet:Q8LCW9OMA:TEVEPIWPaxDb:Q8LCW9Pfam:PF00428Pfam:Q8LCW9PhylomeDB:Q8LCW9PIR:E86141
PRIDE:Q8LCW9PRO:PR:Q8LCW9ProteinModelPortal:Q8LCW9Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_001077439.1RefSeq:NP_171618.1RefSeq:NP_849569.1SMR:Q8LCW9
STRING:3702.AT1G01100.1TAIR:AT1G01100UniGene:At.11901UniProt:Q8LCW9
Coordinates (TAIR10) chr1:-:50284..50954
Molecular Weight (calculated) 11162.30 Da
IEP (calculated) 4.00
GRAVY (calculated) 0.21
Length 112 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTVGELACS YAVMILEDEG IAITADKIAT LVKAAGVSIE SYWPMLFAKM AEKRNVTDLI MNVGAGGGGG APVAAAAPAA GGGAAAAPAA EEKKKDEPAE
101: ESDGDLGFGL FD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)