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AT1G01070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.714
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1); Has 3211 Blast hits to 3199 proteins in 599 species: Archae - 23; Bacteria - 1686; Metazoa - 4; Fungi - 6; Plants - 1233; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).
Protein Annotations
BioGrid:24785eggNOG:ENOG410JX37eggNOG:ENOG410YU38EMBL:AC007323EMBL:BT015826EMBL:BT020209EMBL:BX816126
EMBL:CP002684EnsemblPlants:AT1G01070EnsemblPlants:AT1G01070.1entrez:839550GeneID:839550Genevisible:Q5XEZ0GO:GO:0005886
GO:GO:0006810GO:GO:0006868GO:GO:0015186GO:GO:0016021GO:GO:0022857GO:GO:0044746GO:GO:0048316
hmmpanther:PTHR31218hmmpanther:PTHR31218:SF10HOGENOM:HOG000237441InParanoid:Q5XEZ0InterPro:IPR000620InterPro:IPR030184KEGG:ath:AT1G01070
OMA:VATTWGIPANTHER:PTHR31218PaxDb:Q5XEZ0Pfam:PF00892Pfam:Q5XEZ0PhylomeDB:Q5XEZ0PIR:D86141
PRIDE:Q5XEZ0PRO:PR:Q5XEZ0ProteinModelPortal:Q5XEZ0Proteomes:UP000006548RefSeq:NP_563617.1RefSeq:NP_973734.1STRING:3702.AT1G01070.1
SUPFAM:0043518TAIR:AT1G01070TMHMM:TMhelixUniGene:At.42668UniProt:Q5XEZ0
Coordinates (TAIR10) chr1:-:38898..40877
Molecular Weight (calculated) 39812.30 Da
IEP (calculated) 9.25
GRAVY (calculated) 0.54
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGDMQGVRV VEKYSPVIVM VMSNVAMGSV NALVKKALDV GVNHMVIGAY RMAISALILV PFAYVLERKT RPQITFRLMV DHFVSGLLGA SLMQFFFLLG
101: LSYTSATVSC ALVSMLPAIT FALALIFRTE NVKILKTKAG MLKVIGTLIC ISGALFLTFY KGPQISNSHS HSHGGASHNN NDQDKANNWL LGCLYLTIGT
201: VLLSLWMLFQ GTLSIKYPCK YSSTCLMSIF AAFQCALLSL YKSRDVNDWI IDDRFVITVI IYAGVVGQAM TTVATTWGIK KLGAVFASAF FPLTLISATL
301: FDFLILHTPL YLGSVIGSLV TITGLYMFLW GKNKETESST ALSSGMDNEA QYTTPNKDND SKSPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)