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AT1G01050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pyrophosphorylase 1
Curator
Summary (TAIR10)
Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.
Computational
Description (TAIR10)
pyrophosphorylase 1 (PPa1); FUNCTIONS IN: inorganic diphosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 3 (TAIR:AT2G46860.1); Has 5987 Blast hits to 5987 proteins in 1845 species: Archae - 172; Bacteria - 4313; Metazoa - 247; Fungi - 261; Plants - 270; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.1eggNOG:COG0221eggNOG:KOG1626EMBL:AB493418EMBL:AC007323EMBL:AK226833EMBL:AY052717
EMBL:AY057668EMBL:AY065201EMBL:AY081555EMBL:AY085015EMBL:BT001144EMBL:CP002684EnsemblPlants:AT1G01050
EnsemblPlants:AT1G01050.1entrez:839579Gene3D:3.90.80.10GeneID:839579Genevisible:Q93V56GO:GO:0000287GO:GO:0004427
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006796GO:GO:0019915Gramene:AT1G01050.1gramene_pathway:3.6.1.1
gramene_pathway:PWYQT-4437HAMAP:MF_00209hmmpanther:PTHR10286hmmpanther:PTHR10286:SF10HOGENOM:HOG000236472IntAct:Q93V56InterPro:IPR008162
iPTMnet:Q93V56KEGG:00190+3.6.1.1KEGG:ath:AT1G01050KO:K01507OMA:AWDAWKEPANTHER:PTHR10286PaxDb:Q93V56
PDB:4LUGPDBsum:4LUGPfam:PF00719Pfam:Q93V56PhylomeDB:Q93V56PIR:C86141PRIDE:Q93V56
PRO:PR:Q93V56PROSITE:PS00387ProteinModelPortal:Q93V56Proteomes:UP000006548RefSeq:NP_171613.1scanprosite:PS00387SMR:Q93V56
STRING:3702.AT1G01050.1SUPFAM:SSF50324TAIR:AT1G01050tair10-symbols:AtPPa1tair10-symbols:PPa1UniGene:At.22088UniGene:At.57123
UniProt:Q93V56
Coordinates (TAIR10) chr1:-:31382..32670
Molecular Weight (calculated) 24485.40 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.45
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEETKDNQR LQRPAPRLNE RILSSLSRRS VAAHPWHDLE IGPGAPQIFN VVVEITKGSK VKYELDKKTG LIKVDRILYS SVVYPHNYGF VPRTLCEDND
101: PIDVLVIMQE PVLPGCFLRA RAIGLMPMID QGEKDDKIIA VCVDDPEYKH YTDIKELPPH RLSEIRRFFE DYKKNENKEV AVNDFLPSES AVEAIQYSMD
201: LYAEYILHTL RR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)