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AT1G01030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NGATHA3 (NGA3); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1); Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBK3eggNOG:ENOG4111BY3EMBL:AC007323EMBL:BX814729EMBL:CP002684EnsemblPlants:AT1G01030EnsemblPlants:AT1G01030.1
entrez:839321ExpressionAtlas:Q9MAN1Gene3D:2.40.330.10GeneID:839321Genevisible:Q9MAN1GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009908GO:GO:0048366Gramene:AT1G01030.1hmmpanther:PTHR31140
hmmpanther:PTHR31140:SF4HOGENOM:HOG000239355InParanoid:Q9MAN1InterPro:IPR003340InterPro:IPR015300KEGG:ath:AT1G01030OMA:SKLYIDW
PaxDb:Q9MAN1Pfam:PF02362Pfam:Q9MAN1Pfscan:PS50863PhylomeDB:Q9MAN1PIR:B86141PRIDE:Q9MAN1
PRO:PR:Q9MAN1PROSITE:PS50863ProteinModelPortal:Q9MAN1Proteomes:UP000006548RefSeq:NP_171611.1SMART:SM01019SMR:Q9MAN1
STRING:3702.AT1G01030.1SUPFAM:SSF101936TAIR:AT1G01030tair10-symbols:NGA3UniGene:At.49492UniProt:C3VMM4UniProt:Q9MAN1
Coordinates (TAIR10) chr1:-:11864..12940
Molecular Weight (calculated) 40289.70 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.82
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)