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AT1G01020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16725371 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Arv1-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARV1; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1); Has 311 Blast hits to 311 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 115; Plants - 42; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
DNASU:839569eggNOG:COG5254eggNOG:KOG3134EMBL:AY758070EMBL:CP002684EnsemblPlants:AT1G01020EnsemblPlants:AT1G01020.1
entrez:839569ExpressionAtlas:Q5MK24GeneID:839569GO:GO:0005783GO:GO:0005794GO:GO:0006665GO:GO:0016021
GO:GO:0016125GO:GO:0032366GO:GO:0032541GO:GO:0097036Gramene:AT1G01020.1hmmpanther:PTHR14467HOGENOM:HOG000070828
InterPro:IPR007290OMA:TESTMTRPANTHER:PTHR14467Pfam:PF04161PhylomeDB:Q5MK24Proteomes:UP000006548Reactome:R-ATH-191273
RefSeq:NP_171610.2STRING:3702.AT1G01020.1TAIR:AT1G01020tair10-symbols:ARV1TMHMM:TMhelixUniGene:At.11904UniProt:Q5MK24
Coordinates (TAIR10) chr1:-:6915..8666
Molecular Weight (calculated) 28093.40 Da
IEP (calculated) 8.72
GRAVY (calculated) 0.70
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASEHRCVG CGFRVKSLFI QYSPGNIRLM KCGNCKEVAD EYIECERMII FIDLILHRPK VYRHVLYNAI NPATVNIQHL LWKLVFAYLL LDCYRSLLLR
101: KSDEESSFSD SPVLLSIKVL IGVLSANAAF IISFAIATKG LLNEVSRRRE IMLGIFISSY FKIFLLAMLV WEFPMSVIFF VDILLLTSNS MALKVMTEST
201: MTRCIAVCLI AHLIRFLVGQ IFEPTIFLIQ IGSLLQYMSY FFRIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)